PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_12880V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 340aa    MW: 36400.1 Da    PI: 8.836
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_12880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1062.2e-33131187360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +vrY+eC+kNhAas+Ggha+DGCgEfmp  geegt++al+CaAC+CHRnFHRreve e
  Pp3c18_12880V3.3.p 131 TVRYRECQKNHAASIGGHALDGCGEFMPG-GEEGTVDALRCAACDCHRNFHRREVEGE 187
                         79**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-37120199IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-30132184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-31133184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.121134183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.78E-19262336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-30265337IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-24275331IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDLGTGREGT DPQQQQKSSH QTQQQQQPQP LSPLPAPLPL LMPQPLAVSN FHSAPPPLQQ  60
HHQHHQLHHE IPSSTKLKLL NTSSGNGGSV PSKGDHVGAD QAREILRQAV QGAAAGNESA  120
STKPSNVKKG TVRYRECQKN HAASIGGHAL DGCGEFMPGG EEGTVDALRC AACDCHRNFH  180
RREVEGEVLC ECKRKQKPGV QLGAAVITSQ HPPGGTIPST PMATLALPPS AGVMTPLTMA  240
ALSTGGPTDS DEQDDGLGNS GGGMMMSMRS PSAIKKRFRT KFTNEQKDQM CAFAEKVGWR  300
IQKHDEASVQ EFCATAGIKR HVLKVWMHNN KHTMGKKPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-252763331875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402412.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2593e-61ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A2K1J0V60.0A0A2K1J0V6_PHYPA; Uncharacterized protein
STRINGPP1S3_539V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-56homeobox protein 22