PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_12880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 340aa MW: 36400.1 Da PI: 8.836 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106 | 2.2e-33 | 131 | 187 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhAas+Ggha+DGCgEfmp geegt++al+CaAC+CHRnFHRreve e Pp3c18_12880V3.2.p 131 TVRYRECQKNHAASIGGHALDGCGEFMPG-GEEGTVDALRCAACDCHRNFHRREVEGE 187 79**************************9.999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-37 | 120 | 199 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-30 | 132 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-31 | 133 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.121 | 134 | 183 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.78E-19 | 262 | 336 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-30 | 265 | 337 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-24 | 275 | 331 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDLGTGREGT DPQQQQKSSH QTQQQQQPQP LSPLPAPLPL LMPQPLAVSN FHSAPPPLQQ 60 HHQHHQLHHE IPSSTKLKLL NTSSGNGGSV PSKGDHVGAD QAREILRQAV QGAAAGNESA 120 STKPSNVKKG TVRYRECQKN HAASIGGHAL DGCGEFMPGG EEGTVDALRC AACDCHRNFH 180 RREVEGEVLC ECKRKQKPGV QLGAAVITSQ HPPGGTIPST PMATLALPPS AGVMTPLTMA 240 ALSTGGPTDS DEQDDGLGNS GGGMMMSMRS PSAIKKRFRT KFTNEQKDQM CAFAEKVGWR 300 IQKHDEASVQ EFCATAGIKR HVLKVWMHNN KHTMGKKPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-25 | 276 | 333 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402412.1 | 0.0 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 3e-61 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K1J0V6 | 0.0 | A0A2K1J0V6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S3_539V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-56 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_12880V3.2.p |