PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_2880V3.1.p

Common Name

PHYPADRAFT_168893

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1211aa MW: 131403 Da PI: 6.7714

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_2880V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.1	1e-14	736	774	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaa+++C +C C +C+Nk e Pp3c17_2880V3.1.p 736 CKRCNCKKSKCLKLYCECFAAREFCVGSCACRNCFNKPE 774 79**********************************976 PP
2	TCR	50.7	3.5e-16	820	858	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+N Pp3c17_2880V3.1.p 820 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCRNM 858 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.6E-14	734	775	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.276	735	860	IPR005172	CRC domain
Pfam	PF03638	2.9E-10	737	772	IPR005172	CRC domain
SMART	SM01114	8.1E-19	820	861	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-11	822	858	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1211 aa Download sequence Send to blast
MLTRGGKTAA EKVVREFENG ADLGSPDKRE SIPPLTDMQD SPVFKFLCNL SPIKPAKTVH 60 HAQTYNELTF PPEPRIFASP RSARRSSSSS LKRVVAAERL SALAQAEGRE SLTWQSSISR 120 GALSDNAPSP SPLSRRSDDR LVTLCSRIQT EQVPASQSSG ENLVGQGMFA MNSTQLNSEP 180 TNCETDRIAA TTANFQTQFT DYQPLDQVAS AAMPSDMARY TEDIGEKPGG ARSERSDPSE 240 RRQSTSSLIS QTNDSVMPSI LSQESKCAEY DDQRRVSMTC SSVNEDHGFS YSPIAKGSLE 300 LDQDTAAMTY LLAGNRDVGQ INGKEWSENS SEVDVSRLPY QAASVSSENQ ADTMNEGTEK 360 QERRVLDAMT SQSGFGASTD VRRDTETNLT TEDAGREHSL PPQRADTAGQ RGFRRRCLDF 420 DVARRKSFGS MGGRKSLGSR LKDCSGIDGN NTSVLGDGMR PASDATRTRV QIHVDASRTA 480 TDSVMHTGGV LAREDNLGTM TRMQQLTNST YQNKMDIMYA KTGESHARNS QYSGVTPGVN 540 SPDGVRRSPR VHKSGIGLHL NSLTSSMSFK RNPPSTEGES SKGVLATVLG LQPLTSPSPR 600 EDSGGEGLSS AGYPANLNQS FNSGMGSSLE RRIEIETNSA DAAFSSDKKV VIPTPDFTGL 660 NIENLAPLED SLPLTPVTTS PRDQERSQPY QQELTWQAEG EVTHELLDSP QSSKNRRLSR 720 RKSTASSQGE KPGDGCKRCN CKKSKCLKLY CECFAAREFC VGSCACRNCF NKPEYEATVL 780 NTRQQIESRN PLAFAPKIVQ APESSPIPGD EALDTPASAR HKRGCNCKKS LCLKKYCECY 840 QAGVGCSEGC RCEGCRNMYG RKEGPEEGEA KEKDQVNLTV DKSQAEDPIE LFNSMSGKPD 900 RLRDHGKSNP SPITPTFEYD GLGEPMSRLR STGRKRASSD DQCGSPLAQP ASRPPKSPTR 960 FSSTLDAFDL VPYPQEDTDF SICGAGDSPM TTPTFARIAH ISRWEGLSDL STLTPLSMTT 1020 LQPTPGSCVT TERPDTSPAF TSQMTETSFH SASATSAHHH ASSRIWSSQI PEFRHPDPQS 1080 PNRFDTPHQA QLSSTDDLDS TTRTSTVHPG KNLHNELESV KTAADDDGTP YFLKYGDDFS 1140 SPTRSTVTKS NSPKQKRVTP PRYADSRDQA SSGGCGNSLA SPPGLRNTKK FILQALPSLP 1200 SAAPSSFSNG *

Sequence ? help Back to Top

Protein Sequence Length: 1211 aa Download sequence Send to blast

MLTRGGKTAA EKVVREFENG ADLGSPDKRE SIPPLTDMQD SPVFKFLCNL SPIKPAKTVH  60
HAQTYNELTF PPEPRIFASP RSARRSSSSS LKRVVAAERL SALAQAEGRE SLTWQSSISR  120
GALSDNAPSP SPLSRRSDDR LVTLCSRIQT EQVPASQSSG ENLVGQGMFA MNSTQLNSEP  180
TNCETDRIAA TTANFQTQFT DYQPLDQVAS AAMPSDMARY TEDIGEKPGG ARSERSDPSE  240
RRQSTSSLIS QTNDSVMPSI LSQESKCAEY DDQRRVSMTC SSVNEDHGFS YSPIAKGSLE  300
LDQDTAAMTY LLAGNRDVGQ INGKEWSENS SEVDVSRLPY QAASVSSENQ ADTMNEGTEK  360
QERRVLDAMT SQSGFGASTD VRRDTETNLT TEDAGREHSL PPQRADTAGQ RGFRRRCLDF  420
DVARRKSFGS MGGRKSLGSR LKDCSGIDGN NTSVLGDGMR PASDATRTRV QIHVDASRTA  480
TDSVMHTGGV LAREDNLGTM TRMQQLTNST YQNKMDIMYA KTGESHARNS QYSGVTPGVN  540
SPDGVRRSPR VHKSGIGLHL NSLTSSMSFK RNPPSTEGES SKGVLATVLG LQPLTSPSPR  600
EDSGGEGLSS AGYPANLNQS FNSGMGSSLE RRIEIETNSA DAAFSSDKKV VIPTPDFTGL  660
NIENLAPLED SLPLTPVTTS PRDQERSQPY QQELTWQAEG EVTHELLDSP QSSKNRRLSR  720
RKSTASSQGE KPGDGCKRCN CKKSKCLKLY CECFAAREFC VGSCACRNCF NKPEYEATVL  780
NTRQQIESRN PLAFAPKIVQ APESSPIPGD EALDTPASAR HKRGCNCKKS LCLKKYCECY  840
QAGVGCSEGC RCEGCRNMYG RKEGPEEGEA KEKDQVNLTV DKSQAEDPIE LFNSMSGKPD  900
RLRDHGKSNP SPITPTFEYD GLGEPMSRLR STGRKRASSD DQCGSPLAQP ASRPPKSPTR  960
FSSTLDAFDL VPYPQEDTDF SICGAGDSPM TTPTFARIAH ISRWEGLSDL STLTPLSMTT  1020
LQPTPGSCVT TERPDTSPAF TSQMTETSFH SASATSAHHH ASSRIWSSQI PEFRHPDPQS  1080
PNRFDTPHQA QLSSTDDLDS TTRTSTVHPG KNLHNELESV KTAADDDGTP YFLKYGDDFS  1140
SPTRSTVTKS NSPKQKRVTP PRYADSRDQA SSGGCGNSLA SPPGLRNTKK FILQALPSLP  1200
SAAPSSFSNG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-22	723	866	4	126	Protein lin-54 homolog
5fd3_B	2e-22	723	866	4	126	Protein lin-54 homolog
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400757.1	0.0	uncharacterized protein LOC112294496
TrEMBL	A0A2K1J2K2	0.0	A0A2K1J2K2_PHYPA; Uncharacterized protein
STRING	PP1S29_305V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	6e-48	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c17_2880V3.1.p
Entrez Gene	5938748

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]