PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_21620V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 260aa MW: 28112.3 Da PI: 6.444

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_21620V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	4e-10	96	139	8	51
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka ++ Lee v L a N++L k+l+ Pp3c17_21620V3.6.p 96 KRPLGNREAVRKYREKKKAHTAYLEEQVNHLRALNQQLVKRLQG 139 67778**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-11	89	156	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-12	94	157	No hit	No description
Pfam	PF07716	3.0E-14	94	145	IPR004827	Basic-leucine zipper domain
CDD	cd14686	5.15E-13	95	147	No hit	No description
SuperFamily	SSF57959	1.13E-7	95	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDDGELEFTD HDVFAGCSLC DLPSTPTTTG SMESFLDEIL RSTHACTHTH TCNPPGPDNT 60 HTHTCYHTHT HLFAAGEEET SADKSETLTS GHNSKKRPLG NREAVRKYRE KKKAHTAYLE 120 EQVNHLRALN QQLVKRLQGQ ASLESEVIRL RSILSEFRGR IDAEIGSFPV QASKCPTSTA 180 LVAKTVPNGE CEVQPLSGGF CLNTVSVPCV TDVPCLHTSA SGTSLSRPPM TPSSEPAKWH 240 GNSPTSDCVP SDSTAMHMS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8071	0.0	gametophore\| protonema\| sporophyte

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401501.1	0.0	basic leucine zipper 23-like
Refseq	XP_024401502.1	0.0	basic leucine zipper 23-like
Refseq	XP_024401503.1	0.0	basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-62	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2K1J4Y5	0.0	A0A2K1J4Y5_PHYPA; Uncharacterized protein
STRING	PP1S34_90V6.1	1e-161	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-54	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_21620V3.6.p

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]