PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_1930V3.2.p
Common NamePHYPADRAFT_98143
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 1184aa    MW: 133920 Da    PI: 8.7666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_1930V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1746129999
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +++++++v+p   ++ hg +       +l  +sg++W+v +   ++++++ ++ GW+ F+ +ngL+ gD++vF+l+g+sef   v++f++
  Pp3c17_1930V3.2.p  46 AAMATCWMVIPSAWLKLHGDEVG--NSAVLHGPSGNTWQVGV---GRPKWVAFRVGWRTFAADNGLEKGDILVFTLIGKSEF--AVRIFDN 129
                        56789**********99976644..47***************...9999*****************************9999..9999986 PP
2B354.52.2e-17396483999
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +v+ ++ +++p +f ++h+  +++++ + l d++g +W ++   r +  ++ lt+GW++F+ a gL egD+++F+l++ ++ +l+++vfr+
  Pp3c17_1930V3.2.p 396 HVHGRAFVRFPVTFGKQHM--PRKTVSMHLLDSHGHRWPMTW-LRDNETHMGLTRGWRDFCLAEGLLEGDVCIFELIELNKLTLLIHVFRS 483
                        6677788999********8..557889***************.466666789*************************88**********97 PP
3B343.17.8e-14819905498
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        vl++s+v k+ ++ +  +f+++ +  ++e + + l+d  g++ +v l  ++      ltkGW++F  ++ L+egD++vF+l+++s+++ +v+
  Pp3c17_1930V3.2.p 819 VLKSSNVYKTYIVEILPEFCRQLS--PNERVHIFLRDAAGNKTRVLL--TQEA----LTKGWRQFSLEHLLEEGDVCVFELIDTSRRTILVH 902
                        68899999999999******9886..457789***************..6665....*************************99******** PP

                        EE- CS
                 B3  96 vfr 98 
                        +fr
  Pp3c17_1930V3.2.p 903 IFR 905
                        **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2032130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-2033129IPR015300DNA-binding pseudobarrel domain
CDDcd100177.02E-2034128No hitNo description
SMARTSM010197.2E-1140130IPR003340B3 DNA binding domain
PfamPF023621.1E-1448129IPR003340B3 DNA binding domain
PROSITE profilePS5086312.39353130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18382483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-21385485IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.451388484IPR003340B3 DNA binding domain
SMARTSM010196.5E-12388484IPR003340B3 DNA binding domain
CDDcd100175.66E-19391482No hitNo description
PfamPF023621.7E-15396483IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-17809905IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-17809905IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.193816907IPR003340B3 DNA binding domain
SMARTSM010198.2E-8816907IPR003340B3 DNA binding domain
CDDcd100172.49E-13817905No hitNo description
PfamPF023622.0E-11818905IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 1184 aa     Download sequence    Send to blast
MDKIPHGFRP CLSCTRSCYQ EHWPLQSRDT FRSPCFMRAL CDSNLAAMAT CWMVIPSAWL  60
KLHGDEVGNS AVLHGPSGNT WQVGVGRPKW VAFRVGWRTF AADNGLEKGD ILVFTLIGKS  120
EFAVRIFDNK TGLEKESALT ATNTGCYDSK SPSSLGVKRK QRDDDENAAE LKRICAHNNG  180
VQLVHNDQSI DSTHTEKVLQ QRRAKSSTFS SAAALISYGE CALLDLNSQP LYLHQNPTSG  240
NGNFFPEIDH QLLDAVVART FQGYASGIVY QPHPISIRSQ DVGEECHVQG QSKAQVCGSG  300
GLGPATRFAS QRRPVMDARE RSTEFPHRQN NSPTVIPSHH RSQILDLNKE HFSDDVVPHM  360
LSPDVILERE KALELARRAQ ESIDRPSHLV VLRAFHVHGR AFVRFPVTFG KQHMPRKTVS  420
MHLLDSHGHR WPMTWLRDNE THMGLTRGWR DFCLAEGLLE GDVCIFELIE LNKLTLLIHV  480
FRSSETRDSN HVIITKPKRP ELLQMQHLSH KKCSDRKRKV VDKGDGRRQR KADSLADKDA  540
LPTSSEGQYP CTPTKLALYK AFHRTTHTDS VGPSRVCNRR QDSFAAGSVG RERLKKLSLW  600
ASKVQGGMYS SSKKISCESE SVAGTSLERC CKDDEELTDS VMSKTQDATF SEILCQMSSG  660
CVGANNSRNC RNSPGWVRTS TLSTGLIEKD EKSSAVESRG FECQHFHEQD CTRKRHHINA  720
ARRHEIRGGS GKLVSNTFKH WAKARKRCET YGKTEETRTW GWKWYTPDYS VLRRRMQVLN  780
RNSRFYIASR RTPVTDAQKE AAKEAALAMK TENPATMVVL KSSNVYKTYI VEILPEFCRQ  840
LSPNERVHIF LRDAAGNKTR VLLTQEALTK GWRQFSLEHL LEEGDVCVFE LIDTSRRTIL  900
VHIFRVVDVD YINGNYRNHY RIISAGFQRT QRPLVKCGLK IQANGQVVNE VATKLSFQAR  960
RNSVNRSLYL AILKTRDNLR KPRPVEDDNP YYTKEHMDLN LDLDTSTVPP PALNTLWDSP  1020
SCTMSTSCAS RSPVLKLYPE LDSALMITKN DSSQLCPMSD SLLRLPVVTP PSSGTALADI  1080
CEISSCKNRQ QQTMLYPEND TMVGMPLPLP PDEDDSEPEE GNYYRVVRIL KKRYFDNEKQ  1140
YLAELDGPVV QSDGCRGVRE YDDMKWWIPE KSFSPGFTSC YLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400313.10.0uncharacterized protein LOC112294259
RefseqXP_024400314.10.0uncharacterized protein LOC112294259
RefseqXP_024400315.10.0uncharacterized protein LOC112294259
RefseqXP_024400316.10.0uncharacterized protein LOC112294259
TrEMBLA9TWB40.0A9TWB4_PHYPA; Predicted protein
STRINGPP1S344_29V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-12B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]