PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_18190V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33154.7 Da    PI: 4.8015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_18190V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-184092456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++++ +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Pp3c17_18190V3.4.p 40 KRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 92
                        4578889*********************************************9 PP
2HD-ZIP_I/II122.32.4e-3938130193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+k kqlE+dye+L + y++lk++ e++ k++++L++e+
  Pp3c17_18190V3.4.p  38 EKKRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKIKQLERDYETLTQDYNRLKSDFEAVLKDKKNLKDEV 128
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Pp3c17_18190V3.4.p 129 NR 130
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-191895IPR009057Homeodomain-like
PROSITE profilePS5007117.23494IPR001356Homeobox domain
SMARTSM003892.4E-143798IPR001356Homeobox domain
CDDcd000861.78E-153995No hitNo description
PfamPF000461.7E-154092IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-194692IPR009057Homeodomain-like
PRINTSPR000314.7E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000314.7E-67490IPR000047Helix-turn-helix motif
PfamPF021836.5E-1694134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSAGCGQKRP YYAAYENHSS EEPEDVDEGV DEFSHHVEKK RRLSFDQVRS LERNFEVENK  60
LEPERKMQLA KELGLQPRQV AVWFQNRRAR WKIKQLERDY ETLTQDYNRL KSDFEAVLKD  120
KKNLKDEVNR LKGITTEEEK NVDASEPTQC SSQPASPAQS EKSDIVTSKV RSTPTIDVLP  180
GAAKEPNERS VKRTMSSDSY SSDVMDAESP RTGDSSNPNL PTDAPWVQYH HPQFPPESFV  240
GPTPNPQLAG VGDTLSLQVK LEEMAGFPTD QAFLLSQLEN QTVLPNWWDW A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKIKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159650.0gametophore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280801e-42AB028080.2 Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401472.10.0homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A2K1J4G30.0A0A2K1J4G3_PHYPA; Uncharacterized protein
STRINGPP1S65_52V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-39homeobox protein 16