PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_17640V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 397aa    MW: 42114.4 Da    PI: 6.7127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_17640V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023133155123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cg+ F ++  L  H++ H
  Pp3c17_17640V3.1.p 133 YECQFCGREFASSQALGGHQNAH 155
                         99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-6129160No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5131159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.9E-6133157IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.695133160IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSQDGPSLRL LNGAANRDSA GKAVKLFGFD IKHPSPAEMN GGESSLSAAQ NTVENPSLRD  60
QVPCEGDESQ SPASGSVACD TDAAPDSVAN DAAQEQCDDN AGECGGGSST HVSTEQTNDC  120
SDSTAPLWEN RKYECQFCGR EFASSQALGG HQNAHKRERQ EAKRAQFHAN RIAAANSDRS  180
SGWGGRGGYG IRQSHTGQQF VTPHVSRLVA PHSSQLPRSH GSPGPQLMPL HVAAASMSSY  240
EDMTPMAHGM SLMNVGVPNG TFPHPMTHGM QCPPSPYVFY YGPLAMNFPG SRPTFPSMYG  300
DYMRYTEYPN MFAVPSQGMH LPQPWSHSQS QPGSLPSARF PLKGSDGVRT ENVIRPRPLA  360
HAPGTLQTQQ QRPLSGGGAS NNVLDLQLGL GNSPAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400973.10.0uncharacterized protein LOC112294583 isoform X1
RefseqXP_024400974.10.0uncharacterized protein LOC112294583 isoform X1
RefseqXP_024400975.10.0uncharacterized protein LOC112294583 isoform X2
RefseqXP_024400976.10.0uncharacterized protein LOC112294583 isoform X2
TrEMBLA0A2K1J4C90.0A0A2K1J4C9_PHYPA; Uncharacterized protein
STRINGPP1S173_9V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.17e-14C2H2 family protein