PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_17000V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 473aa    MW: 48299.8 Da    PI: 6.9699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_17000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11283328555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Pp3c17_17000V3.1.p 283 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 328
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17276337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-13276332No hitNo description
PROSITE profilePS5088817.453278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16280337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAQQPSTTMM MAMQQQQVHG GGNHHGGMGF HHPGMGGQQG GGGGGSGGGP VMDELMEHMF  60
GMPGGGMFDM AGGRVGPWDY NVGSGAGKGF GVGGMPSAVG LSKKGNEEVD YGLSEVQIRH  120
HQQQSAGARG ESGSGGMPVV REARNGAPDT LTRSVSLGSS ASEESGPQQG KGDQLMGSMV  180
APSKHLQQPY GGAGSGVPTL PMNFAPAKAE NVMLVGEMDS HNAHGKRFRE DEDGRPRPTG  240
AMPPGGCQGS GYANPGVPAG QSLPGMGARP RVRARRGQAT DPHSIAERLR RERIAERMKA  300
LQELVPNSNK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAGALVNSDP PAEGGNNFAA  360
SAGSSGVSNP AQDGLASALT ERQVTRMMED DMGAAMQYLQ SKGLCLMPIS LATAISTTNK  420
GPAQANANTG DRQGSAAASN IGKSTAGSSL AGGSKEDGSE AGRVTESTTQ DT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.49760.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401108.10.0transcription factor UNE12-like
TrEMBLA0A2K1J4A10.0A0A2K1J4A1_PHYPA; Uncharacterized protein
STRINGPP1S173_83V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-54LJRHL1-like 1