PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_1430V3.2.p

Common Name

PHYPADRAFT_86604

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 312aa MW: 35435 Da PI: 7.4352

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_1430V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.7	5.5e-17	57	144	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt e l+Liea++e er ++ k ++ +W+ v+ +m+ + +ers qC++kwen+ k+yk+++e++ + yf++++ Pp3c17_1430V3.2.p 57 WTVTEMLTLIEAKKEERERCQEYKsqgvklPAAEKWRIVAMHMETKEMERSGSQCQDKWENMMKDYKAVREWQYVSG-GG--AKDYFKDMT 144 *******************96556677789**************************************98642.22..246788776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-6	49	121	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.002	49	119	IPR017877	Myb-like domain
SMART	SM00717	8.8E-4	53	121	IPR001005	SANT/Myb domain
Pfam	PF13837	7.6E-19	55	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEENGTCEAS DPIQQDVCGP VNGTQLQLHN LGCVGTVDSG LNGRCGGNKK RSRSAPWTVT 60 EMLTLIEAKK EERERCQEYK SQGVKLPAAE KWRIVAMHME TKEMERSGSQ CQDKWENMMK 120 DYKAVREWQY VSGGGAKDYF KDMTNKERKD ASLPPQMDEI VFYSLHAIQN EKEEKKDRVR 180 WKDREFKTPV SSSTPNLLTK DNFGSSEGND MESMDTDSNG KRRGKKMHHE RQQQQQQTRA 240 SLDNPVVLND FVHAMKDGSK EIIDCLMKVM DRSDRRQEAV EMENPKPKDT AILARVLVAL 300 ADAVKTVAQK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400407.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A9T0V7	0.0	A9T0V7_PHYPA; Predicted protein
STRING	PP1S148_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_1430V3.2.p
Entrez Gene	5935447

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]