PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_13710V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 344aa MW: 36645.6 Da PI: 10.4375

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_13710V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.2	1.8e-19	27	73	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++++d++k+Fs pi++AA++L+vc +vL riC ++GI+RWP+Rk+ Pp3c17_13710V3.1.p 27 SLTIDDVAKFFSFPIAEAAQKLNVCGSVLQRICKENGIARWPYRKVM 73 7999*****************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.528	12	95	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-19	27	73	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MPSDVLMNRH MAKLGMAPQS VSWSDGSLTI DDVAKFFSFP IAEAAQKLNV CGSVLQRICK 60 ENGIARWPYR KVMAGKSIEE IKEEGLKELA ANPSAYKVLD KQPTSSLENI SGTPVPTPAS 120 IPVSTSPIGS NPTMTVGQTD PKRPAQQAGG ASVQRAQVQK SAQKIASAAQ TKTSAPGNSP 180 AQRVNQQNTL AQSHSPAPSH VRSPAISHAP APQKQKPAST LDDFKIGFPS KGLRRASTRW 240 WGSLEKELAT TSNLPEDKDI YIECPESLIL GSENLSEGGF PTASSLLVRT RKKASLRGRS 300 SIAHAVTRGY GIHKLGAKDA ATLKFVFGDS LPKHWKAAFS DVS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MPSDVLMNRH MAKLGMAPQS VSWSDGSLTI DDVAKFFSFP IAEAAQKLNV CGSVLQRICK  60
ENGIARWPYR KVMAGKSIEE IKEEGLKELA ANPSAYKVLD KQPTSSLENI SGTPVPTPAS  120
IPVSTSPIGS NPTMTVGQTD PKRPAQQAGG ASVQRAQVQK SAQKIASAAQ TKTSAPGNSP  180
AQRVNQQNTL AQSHSPAPSH VRSPAISHAP APQKQKPAST LDDFKIGFPS KGLRRASTRW  240
WGSLEKELAT TSNLPEDKDI YIECPESLIL GSENLSEGGF PTASSLLVRT RKKASLRGRS  300
SIAHAVTRGY GIHKLGAKDA ATLKFVFGDS LPKHWKAAFS DVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024399868.1	0.0	mucin-1-like
Refseq	XP_024399869.1	0.0	mucin-1-like
TrEMBL	A0A2K1J3T8	0.0	A0A2K1J3T8_PHYPA; Uncharacterized protein
STRING	PP1S98_29V6.2	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c17_13710V3.1.p