PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_12880V3.2.p
Common NamePHYPADRAFT_171843
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 677aa    MW: 76388.5 Da    PI: 7.2966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_12880V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.4e-10501291498
                         T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + l lp  f+++h +     + +ltl+ ++g +W   l ++  s++++++ GW+e + + +L+++D vvF l ++s f  +++vf+
  Pp3c17_12880V3.2.p  50 CKLELPTVFLDHHiK---SLKEKLTLQGPDGHRWPAMLGMTLDSKTCIMQ-GWQEVAADYNLEVKDQVVFFLLNDSHF--MIQVFD 129
                         678899****88842...34558***************888888888888.********************9999999..999997 PP
2B337.73.8e-12535612684
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                         ++  v     l +pk+ +++ +++  ++++l+l d++gr+W v+  +  ++++  + +kGW +Fv +++L+egD +vF l
  Pp3c17_12880V3.2.p 535 KKTQVYCGFHLKVPKEMVDALQLP-LKTMELMLCDSTGRKWLVEW-MGAHPKHpGINSKGWTRFVLEHHLEEGDCCVFDL 612
                         5556666677999*****999877.6899****************.455555545678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-1430130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1631129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1332129No hitNo description
SMARTSM010190.002734131IPR003340B3 DNA binding domain
PROSITE profilePS5086310.0137131IPR003340B3 DNA binding domain
PfamPF023623.2E-850129IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-16525622IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-15525625IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-13528626No hitNo description
SMARTSM010190.0017530628IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814530628IPR003340B3 DNA binding domain
PfamPF023627.2E-10537613IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEKATSYNLQ QREDAGLWKE LLRTARQGTT NKSFFVVDVV GSCLHTAMFC KLELPTVFLD  60
HHIKSLKEKL TLQGPDGHRW PAMLGMTLDS KTCIMQGWQE VAADYNLEVK DQVVFFLLND  120
SHFMIQVFDD ENNVKLRVLP STDREAQSNG DFSKARSKQL TRELAEKAKT DVRASAQEED  180
LPLLRHSTVD GNEVLHIPDS SEDEEHVPSQ HRNLDDGGKV NAVSPIATSV LKIRPEKNHT  240
RCNSEVTKVD AEDRTGTTPE DMDLQILVPL REPAEMELRK NLRRISGVDD DDDNDNDVQN  300
ERNSSIIENL TGNQATRRSI PVSSEPSSSE LVITRSRSRK LQRKTGGYKD DNDLYTSSTV  360
RKLGCEEQVF NGEKADSGCN REKRLTQRRS LGMKKMLEMP PVRAVKEPSS NLDLGTSEVM  420
LQENVESRVI HPAAPRTLRE LRRKTLAKSR NNGKVSEDSG EKKAANVDPP EDVVKPVYKR  480
PKPMKIGGMA PPKEPPILYI SKRRPVTDKE RQQALITAQE FANMSKNKHY VMQLKKTQVY  540
CGFHLKVPKE MVDALQLPLK TMELMLCDST GRKWLVEWMG AHPKHPGINS KGWTRFVLEH  600
HLEEGDCCVF DLPDPWVSNI SVQIFPVVPL VESSENGWRD HYIFAQQGVQ KEMGSPSGRS  660
PAQNYASHAQ AWANST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28410.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401457.10.0uncharacterized protein LOC112294814 isoform X2
TrEMBLA0A2K1J3N00.0A0A2K1J3N0_PHYPA; Uncharacterized protein
STRINGPP1S313_64V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-07B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]