PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_11650V3.1.p
Common NamePHYPADRAFT_230365
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 798aa    MW: 85744.8 Da    PI: 10.516
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_11650V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.31.2e-06405463162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         eke +r rr q NRe+Ar   +RK+  +e L++k+ eL+ae + Lk    +l+++v++lk +
  Pp3c17_11650V3.1.p 405 EKEARRLRRVQANRESARQTIRRKQVLCEDLARKARELQAEKDNLK---LTLEQKVKELKRH 463
                         799*******************************************...7777777777754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-4403465No hitNo description
SMARTSM003381.9E-4405469IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.852407470IPR004827Basic-leucine zipper domain
CDDcd147024.28E-12410454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MTHALRYCSD SRIMESSGEV IKEPIPSRLA SGKEPGRSVK RKRAVSESEQ GHKRSHGASG  60
VNSSSRTPSK SKCIKDAGAV NSIAGKRKRS TTVEEDPEMD SEHVMNAAQA LFDLFAGAGT  120
FKNDATDSKS GEGKADGVKW AGKKNRSSRS SKRPDDSFKL SSSSTTSATV TDIPEVLDSS  180
ASHNHHVVAS HPHASQTGAQ TVNHEEDSEA DADAKSTDMS PCGLGFDRGH RLLSQSSVES  240
TLLDSRAESP SSPLRVLRPE ADLIPKVEEE LMLQFGFQRN PPLRPVTKPS IFWKLKGEEN  300
CIVEVDESKD VKLALKQAQR RKPRAPNVKG QSPMLQGDVL DVPLASSGIV LKEFIEENKF  360
QVPVTLNLFE SVKEEIGRAK LGGRELYQTG SSTQGRLRSA LSEAEKEARR LRRVQANRES  420
ARQTIRRKQV LCEDLARKAR ELQAEKDNLK LTLEQKVKEL KRHQEINRHL KEQIPLQAES  480
LDAPVSSSKG SATASPAPAT GPVGGIPMLP YWWAFALAQS VGATQSSGTP QMPGGAVMPP  540
DFNAVFAATV AAFNNGAAMN PNMWMNLVAN MSKGQAPGIV AAPDQQPSLA HSAARPAGTP  600
ELPQKPSASM SGGTDRSQGL GMSPMTKNYV SASPMKGVAN ADPVVALSGS SPQTSRKISV  660
GLPSMPSSHQ SRGKYQVARL RTPASHSLQR TGSGMTQYHV AGDGTVSTSI TLSLGLGSHQ  720
LHHPGRTEQM RKPGNLKFFP TIGNGVKGFL GPRVGAFQSE AAAKATEARR RRRELKRTKS  780
LQSQLQHDKK LVSAISL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400833.10.0uncharacterized protein LOC112294527 isoform X1
TrEMBLA0A2K1J3J40.0A0A2K1J3J4_PHYPA; Uncharacterized protein
STRINGPP1S105_16V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-15bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]