PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_7480V3.2.p | ||||||||
Common Name | SBP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 661aa MW: 70254.1 Da PI: 8.1758 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.2e-40 | 238 | 315 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls +k+yh+rhkvCe+hska++++++g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Pp3c16_7480V3.2.p 238 RCQVQGCDADLSCCKDYHKRHKVCEMHSKAATAIAAGIEQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNQRRRKSQP 315 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-33 | 232 | 300 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.445 | 236 | 313 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.11E-37 | 237 | 317 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.8E-30 | 239 | 312 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MAMALKTNLV HPGVMSGIQV PECWSSTGLE YENLAESWEW EDPITSFPSR LVEGHLRPQS 60 NSWVAAACSA VSLAAVGASK PGEFQHGYIL GSGTHLGTSF SSGISDVAGG RRNCGADFPA 120 LVKNEPDEHK AEQVTVGKPV SLSGRKDGYF FSLRSSPSPK NEDRPAEEDN HTQPCGGQSS 180 GSGLVNGGRD CQKVALKPGR RTHFENSAVV GQVKASLTAF SPPGKKQRAL SPSTQIPRCQ 240 VQGCDADLSC CKDYHKRHKV CEMHSKAATA IAAGIEQRFC QQCSRFHVLK EFDEGKRSCR 300 RRLAGHNQRR RKSQPETRSL FDFSGSFLRR GISTSSIAGS PFYIPDSKQS SFLHPHLPSS 360 LEHGLHAYGY NLTRSSPWPL KSRDGSIPAL QLQGSSSPVA APYPSSGLIL GGYHFLDGPL 420 GSPGQGLSLS SSTGGVLGSL EQSRVGSCSQ SLSSVSGLAN SGRALSLLSL QSWASRPTQG 480 ASAPVSLGLS QADDSTLEQL VASSSDCSNR GSRFSHHLQL PCGGSSTSAQ QQFDKQLSIQ 540 SGGLESVGLN CGLAATGYGA HHHQGSGNPN ILAGFRGYYE TNSTLSAHNG QDIQTLNSIC 600 ASHHAFPTIN LMQLDQPSDQ VHQGTPYSHG LYLPVSVGEH RGFTDLRPFE SSMCSSQHLL 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 231 | 312 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 307 | 312 | QRRRKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1595 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ968318 | 0.0 | AJ968318.1 Physcomitrella patens SBP3 gene for squamosa promoter binding protein 3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398587.1 | 0.0 | uncharacterized protein LOC112293436 isoform X2 | ||||
TrEMBL | Q1MU26 | 0.0 | Q1MU26_PHYPA; Squamosa promoter binding protein 3 | ||||
STRING | PP1S194_53V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-38 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_7480V3.2.p |
Publications ? help Back to Top | |||
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