PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_6910V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

VOZ

Protein Properties

Length: 374aa MW: 42151.2 Da PI: 7.1345

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_6910V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	163.4	1.3e-50	210	331	93	217
VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyr 184 +lfd+++ get+rewlffdkprrafesg rkqrslpdy+grgwhesrkq rsyymdpqp + ewhlyeye+ ++ ++alyr Pp3c16_6910V3.2.p 210 QNLFDVAVHPGETLREWLFFDKPRRAFESGRRKQRSLPDYEGRGWHESRKQ---------RSYYMDPQPEGRNEWHLYEYELASCTDCALYR 292 589********************************************97.........9*************************** PP VOZ 185 lelklv.dekksakgkvskd.....sladlqkklgrlta 217 lelk+ +kk k++v+++ s+a lq+++grlta Pp3c16_6910V3.2.p 293 LELKQGiASKKGGKARVQSQtqsdtSVASLQHQIGRLTA 331 8637899999998654222237999******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MHSTKQKASR SSHHLRMKTN NRVDDLQGME QMQQMLREWK AELREASPAN SLLQSANPSS 60 SELSSDMERL LQFSLKDEDD DATSKAAPMT SELEQQSYNR HPPSPAPYQE AVGLEAFARI 120 EQILQENPQS NLEAGAKKLT AHSMSDYSSR PIIPPSAAFL YPKCALWDCP RPAVGPNGRA 180 HYCSHFHEDL AIKEGAPGMP PVKLLFTWVQ NLFDVAVHPG ETLREWLFFD KPRRAFESGR 240 RKQRSLPDYE GRGWHESRKQ RSYYMDPQPE GRNEWHLYEY ELASCTDCAL YRLELKQGIA 300 SKKGGKARVQ SQTQSDTSVA SLQHQIGRLT ADLSQFEGQK MLSSDLGRGE LVPALANQSS 360 SQRTPFNCTA ELQ*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MHSTKQKASR SSHHLRMKTN NRVDDLQGME QMQQMLREWK AELREASPAN SLLQSANPSS  60
SELSSDMERL LQFSLKDEDD DATSKAAPMT SELEQQSYNR HPPSPAPYQE AVGLEAFARI  120
EQILQENPQS NLEAGAKKLT AHSMSDYSSR PIIPPSAAFL YPKCALWDCP RPAVGPNGRA  180
HYCSHFHEDL AIKEGAPGMP PVKLLFTWVQ NLFDVAVHPG ETLREWLFFD KPRRAFESGR  240
RKQRSLPDYE GRGWHESRKQ RSYYMDPQPE GRNEWHLYEY ELASCTDCAL YRLELKQGIA  300
SKKGGKARVQ SQTQSDTSVA SLQHQIGRLT ADLSQFEGQK MLSSDLGRGE LVPALANQSS  360
SQRTPFNCTA ELQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6779	1e-141	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024378749.1	1e-148	transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	1e-82	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2K1KF99	1e-147	A0A2K1KF99_PHYPA; Uncharacterized protein
STRING	PP1S113_68V6.1	1e-148	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	6e-85	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Pp3c16_6910V3.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]