PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_19970V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 540aa    MW: 58597.1 Da    PI: 5.1044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_19970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-094594991055
                         HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r RR++iN+++  L+ l+P+ a      K++ +++L +A++Y+k Lq
  Pp3c16_19970V3.1.p 459 RHRREKINERLKSLQNLVPNgA------KVDIVTMLDEAIHYVKFLQ 499
                         89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-14448511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14453508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-13455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10458503No hitNo description
PfamPF000101.6E-6459499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVQLYMSSVE EQRETMVQPY VSSMDSGSTS GRQTPSCVVQ QGSNTFETSN LWEEWTQASN  60
GDDTVSTSNF LPEISSFTSS RLSFQQSDSL TTWMSGFPPL SQTALSPDLS HSSDPVDHPP  120
AFMQEGLGPG DSILDYSPAL TEMYPKSSSK HNSSDCLPYP AASAPDKKMT DHELGSAISL  180
AYDRGTVSRQ LLRALGPLSP SSPLALQNGL QNPLGDPWDA SPSAMPWPMA TTGHAYGPGA  240
TRTSIPDHLA NAINHLEGIA PSSASHASKP RHTDIFIAPN GTFDSTPGGW TPQYYDGSVT  300
TDESVKAMKL IASLREAGHA EATIGFCTES KPSFLRGGDR TTSPVDSFFG KCVGAKTSIK  360
QACSGKHPLE LEEIVDSENS ELNPTQLKRS KLFENHPNAL WSDQSMNGRE LRSYSHLVGS  420
SLTASQPMDI IAIGPALNTD GKPRAKRGSA TDPQSVYARH RREKINERLK SLQNLVPNGA  480
KVDIVTMLDE AIHYVKFLQN QVELLKSDEL WIYATPNKYN GMDISDLSDM YLQELESRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563971e-107EF156397.1 Physcomitrella patens Rhd6-like 5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398938.10.0uncharacterized protein LOC112293574 isoform X3
TrEMBLA0A2K1J9E00.0A0A2K1J9E0_PHYPA; Uncharacterized protein
STRINGPP1S327_51V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-39ROOT HAIR DEFECTIVE 6-LIKE 2