PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_19170V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 297aa    MW: 32847.3 Da    PI: 7.4068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_19170V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.7e-21957149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien s rqv fskRr g++KKA+ELS+LC+ ev vi+fs+ gk + +
  Pp3c16_19170V3.2.p  9 KKIENPSARQVCFSKRRGGLIKKASELSILCGSEVGVIVFSQAGKAFSF 57
                        68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.375161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-25170IPR002100Transcription factor, MADS-box
CDDcd002653.27E-35268No hitNo description
PRINTSPR004041.8E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRAKIEIKK IENPSARQVC FSKRRGGLIK KASELSILCG SEVGVIVFSQ AGKAFSFGHP  60
SIDYVIDKTL SGESSDSDSG SAVTDVASQK VQQVQALQQQ QKQVTQLLAS ERELQRRLLS  120
YPFWWQKPVT NYRPQELHYL LQRLDGLYEM LLSRAAALQH GAENGDAEAR LLVLGNLTPS  180
SGQAAGDLYD REVSAFVEDC LPDGPSAPAD NGQFIMNLAA PCWDMSPKPG FFDMTPFSKP  240
ESEFETRNSR VKFLLKLILT STCKNLRTIW QSFGWDEVAH ARFYGFATLS GEKLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14190191MEF2C
5f28_B1e-14190191MEF2C
5f28_C1e-14190191MEF2C
5f28_D1e-14190191MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398543.11e-114agamous-like MADS-box protein AGL61
TrEMBLA9SI211e-112A9SI21_PHYPA; Type I-M alpha MADS-domain protein PPTIM2
STRINGPP1S81_202V6.11e-113(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-23AGAMOUS-like 61