PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24980V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 884aa    MW: 94591.5 Da    PI: 7.665
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24980V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15398457155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c15_24980V3.5.p 398 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 457
                         78*******************655454478446*************************98 PP
2AP245.61.8e-14502551355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c15_24980V3.5.p 502 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDLAAIKFRG 551
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-17398467IPR016177DNA-binding domain
CDDcd000181.16E-20398467No hitNo description
PfamPF008475.3E-12398457IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16399466IPR001471AP2/ERF domain
SMARTSM003804.6E-28399471IPR001471AP2/ERF domain
PROSITE profilePS5103219.467399465IPR001471AP2/ERF domain
PRINTSPR003679.7E-6400411IPR001471AP2/ERF domain
CDDcd000185.69E-23500561No hitNo description
SuperFamilySSF541711.96E-17500561IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-17501559IPR001471AP2/ERF domain
SMARTSM003806.6E-32501565IPR001471AP2/ERF domain
PROSITE profilePS5103219.111501559IPR001471AP2/ERF domain
PfamPF008472.7E-10502551IPR001471AP2/ERF domain
PRINTSPR003679.7E-6541561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MKSMNNWLTF SLKSPHLALD AVKQLADPVN HQVRSTNSLI LSSMSHNHNS LGGYQDSAND  60
CYNSLRSSSD GGNSTSGQGL EMMRSDGSLC IMEALSRSHS AAEHWPQQRG MQSDGGIQQH  120
TLLTADQLSR LTRNGGAGDQ QLTGSHSHYE LQSSGTETRD GPKLEDFLGG ASLGGQYSDR  180
EAQQQQLDSL YYNAGNPGAS YGRDGQSRIN VNLPYSSQTG GGSLHDVPSS YHVAYGRVQD  240
QSSLTNPQGY EHQQSRVQHE LQESNLLAGS RLHPQNLLQA ALDQSATAEL LSDCALQLPS  300
GGSPNPGSED YGLKTWLRHQ AAAEKRVLNG LSGLQPLTLS MSAGSHQSNG SAAVHGGGQL  360
PIAESPTGPE PRKRGAGRAG SKEPSPRKSI DTFGQRTSVY RGVTRHRWTG RYEAHLWDNS  420
CRKEGQTRKG RQVYLGGYDK EEKAARAYDL AALKYWGPNT TINFPLSTYE AELEEMKNMS  480
RQEYVASLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TYSTQEEAAE  540
AYDLAAIKFR GINAVTNFDI SRYDAGRIQQ AGASGHHGAE AMKAAKEAEV AAMQSRVGAT  600
ASQMHSHSQS QVNEEQQTST HSTGGPGSQL TSEVLSGQGG LSKNLMEWQM LYQQQARNSW  660
ESSSREESQR ARLGFGVDSM RAPSTQSKFP PPTNGMLLRN LMGLEALPQD QNRRGGESSC  720
SGNGGLLGQG MPSSGSMMST SGFEGGGSSA YQSGDGRALN SPPMSNSAYQ QQGQQGGQGG  780
QGSVDRGAVV DSPKNSVGES EEASSKSSAY DPVLQGELSR SGILYMSPGS GSQGKMGSYV  840
ESNPMSPWIS SNAATVQGLA GRSNLSMGGH MGSGPIFAHS WNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.146210.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755920.0AB675592.1 Physcomitrella patens APB4 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
TrEMBLA0A2K1JEI20.0A0A2K1JEI2_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5