PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24980V3.3.p
Common NameAPB4
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 793aa    MW: 84998.2 Da    PI: 8.5975
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24980V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15307366155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c15_24980V3.3.p 307 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 366
                         78*******************655454478446*************************98 PP
2AP245.71.6e-14411460355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c15_24980V3.3.p 411 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDLAAIKFRG 460
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-12307366IPR001471AP2/ERF domain
CDDcd000182.61E-20307376No hitNo description
SuperFamilySSF541714.32E-17307376IPR016177DNA-binding domain
SMARTSM003804.6E-28308380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16308375IPR001471AP2/ERF domain
PROSITE profilePS5103219.467308374IPR001471AP2/ERF domain
PRINTSPR003677.9E-6309320IPR001471AP2/ERF domain
CDDcd000181.26E-22409470No hitNo description
SuperFamilySSF541711.7E-17409470IPR016177DNA-binding domain
SMARTSM003806.6E-32410474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17410468IPR001471AP2/ERF domain
PROSITE profilePS5103219.111410468IPR001471AP2/ERF domain
PfamPF008472.4E-10411460IPR001471AP2/ERF domain
PRINTSPR003677.9E-6450470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MHIMKRLRLP AEHWPQQRGM QSDGGIQQHT LLTADQLSRL TRNGGAGDQQ LTGSHSHYEL  60
QSSGTETRDG PKLEDFLGGA SLGGQYSDRE AQQQQLDSLY YNAGNPGASY GRDGQSRINV  120
NLPYSSQTGG GSLHDVPSSY HVAYGRVQDQ SSLTNPQGYE HQQSRVQHEL QESNLLAGSR  180
LHPQNLLQAA LDQSATAELL SDCALQLPSG GSPNPGSEDY GLKTWLRHQA AAEKRVLNGL  240
SGLQPLTLSM SAGSHQSNGS AAVHGGGQLP IAESPTGPEP RKRGAGRAGS KEPSPRKSID  300
TFGQRTSVYR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDKE EKAARAYDLA  360
ALKYWGPNTT INFPLSTYEA ELEEMKNMSR QEYVASLRRK SSGFSRGASM YRGVTRHHQH  420
GRWQARIGRV AGNKDLYLGT YSTQEEAAEA YDLAAIKFRG INAVTNFDIS RYDAGRIQQA  480
GASGHHGAEA MKAAKEAEVA AMQSRVGATA SQMHSHSQSQ VNEEQQTSTH STGGPGSQLT  540
SEVLSGQGGL SKNLMEWQML YQQQARNSWE SSSREESQRA RLGFGVDSMR APSTQSKFPP  600
PTNGMLLRNL MGLEALPQDQ NRRGGESSCS GNGGLLGQGM PSSGSMMSTS GFEGGGSSAY  660
QSGDGRALNS PPMSNSAYQQ QGQQGGQGGQ GSVDRGAVVD SPKNSVGESE EASSKSSAYD  720
PVLQGELSRS GILYMSPGSG SQGKMGSYVE SNPMSPWISS NAATVQGLAG RSNLSMGGHM  780
GSGPIFAHSW NE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.146210.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755920.0AB675592.1 Physcomitrella patens APB4 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
TrEMBLA0A2K1JEI20.0A0A2K1JEI2_PHYPA; Uncharacterized protein
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5