PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24980V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 883aa    MW: 94520.5 Da    PI: 7.665
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24980V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15397456155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c15_24980V3.1.p 397 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 456
                         78*******************655454478446*************************98 PP
2AP245.61.8e-14501550355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c15_24980V3.1.p 501 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDLAAIKFRG 550
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-12397456IPR001471AP2/ERF domain
CDDcd000181.15E-20397466No hitNo description
SuperFamilySSF541714.97E-17397466IPR016177DNA-binding domain
PROSITE profilePS5103219.467398464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16398465IPR001471AP2/ERF domain
SMARTSM003804.6E-28398470IPR001471AP2/ERF domain
PRINTSPR003679.6E-6399410IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17499560IPR016177DNA-binding domain
CDDcd000185.46E-23499560No hitNo description
Gene3DG3DSA:3.30.730.101.6E-17500558IPR001471AP2/ERF domain
PROSITE profilePS5103219.111500558IPR001471AP2/ERF domain
SMARTSM003806.6E-32500564IPR001471AP2/ERF domain
PfamPF008472.7E-10501550IPR001471AP2/ERF domain
PRINTSPR003679.6E-6540560IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MKSMNNWLTF SLKSPHLALD AVKQLADPVN HQVRSTNSLI LSSMSHNHNS LGGYQDSAND  60
CYNSLRSSSD GGNSTSGQGL EMMRSDGSLC IMEALSRSHS AEHWPQQRGM QSDGGIQQHT  120
LLTADQLSRL TRNGGAGDQQ LTGSHSHYEL QSSGTETRDG PKLEDFLGGA SLGGQYSDRE  180
AQQQQLDSLY YNAGNPGASY GRDGQSRINV NLPYSSQTGG GSLHDVPSSY HVAYGRVQDQ  240
SSLTNPQGYE HQQSRVQHEL QESNLLAGSR LHPQNLLQAA LDQSATAELL SDCALQLPSG  300
GSPNPGSEDY GLKTWLRHQA AAEKRVLNGL SGLQPLTLSM SAGSHQSNGS AAVHGGGQLP  360
IAESPTGPEP RKRGAGRAGS KEPSPRKSID TFGQRTSVYR GVTRHRWTGR YEAHLWDNSC  420
RKEGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPNTT INFPLSTYEA ELEEMKNMSR  480
QEYVASLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT YSTQEEAAEA  540
YDLAAIKFRG INAVTNFDIS RYDAGRIQQA GASGHHGAEA MKAAKEAEVA AMQSRVGATA  600
SQMHSHSQSQ VNEEQQTSTH STGGPGSQLT SEVLSGQGGL SKNLMEWQML YQQQARNSWE  660
SSSREESQRA RLGFGVDSMR APSTQSKFPP PTNGMLLRNL MGLEALPQDQ NRRGGESSCS  720
GNGGLLGQGM PSSGSMMSTS GFEGGGSSAY QSGDGRALNS PPMSNSAYQQ QGQQGGQGGQ  780
GSVDRGAVVD SPKNSVGESE EASSKSSAYD PVLQGELSRS GILYMSPGSG SQGKMGSYVE  840
SNPMSPWISS NAATVQGLAG RSNLSMGGHM GSGPIFAHSW NE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.146210.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755920.0AB675592.1 Physcomitrella patens APB4 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396532.10.0uncharacterized protein LOC112292371 isoform X2
TrEMBLA0A2K1JEI20.0A0A2K1JEI2_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5