PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24790V3.3.p
Common NameAPB4
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 809aa    MW: 86403.7 Da    PI: 7.7718
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24790V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15323382155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pp3c15_24790V3.3.p 323 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 382
                         78*******************655454478446*************************98 PP
2AP245.71.6e-14427476355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c15_24790V3.3.p 427 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDLAAIKFRG 476
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-12323382IPR001471AP2/ERF domain
CDDcd000182.49E-20323392No hitNo description
SuperFamilySSF541714.45E-17323392IPR016177DNA-binding domain
PROSITE profilePS5103219.467324390IPR001471AP2/ERF domain
SMARTSM003804.6E-28324396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-16324391IPR001471AP2/ERF domain
PRINTSPR003678.2E-6325336IPR001471AP2/ERF domain
CDDcd000181.19E-22425486No hitNo description
SuperFamilySSF541711.77E-17425486IPR016177DNA-binding domain
SMARTSM003806.6E-32426490IPR001471AP2/ERF domain
PROSITE profilePS5103219.111426484IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17426484IPR001471AP2/ERF domain
PfamPF008472.4E-10427476IPR001471AP2/ERF domain
PRINTSPR003678.2E-6466486IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MAQMLTSACA PGRLMVESCV GPCGWTAEHW PQQRGMQSDG GIQQHTLLTA DQLSRLTRNG  60
GAGDQQLTGS HSHYELQSSG TETRDGPKLE DFLGGASLGG QYSDREAQQQ QLDSLYYNAG  120
NPGASYGRDG QSRINVNLPY SSQTGGGSLH DVPSSYHVAY GRVQDQSSLT NPQGYEHQQS  180
RVQHELQESN LLAGSRLHPQ NLLQAALDQS ATAELLSDCA LQLPSGGSPN PGSEDYGLKT  240
WLRHQAAAEK RVLNGLSGLQ PLTLSMSAGS HQSNGSAAVH GGGQLPIAES PTGPEPRKRG  300
AGRAGSKEPS PRKSIDTFGQ RTSVYRGVTR HRWTGRYEAH LWDNSCRKEG QTRKGRQVYL  360
GGYDKEEKAA RAYDLAALKY WGPNTTINFP LSTYEAELEE MKNMSRQEYV ASLRRKSSGF  420
SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTYSTQ EEAAEAYDLA AIKFRGINAV  480
TNFDISRYDA GRIQQAGASG HHGAEAMKAA KEAEVAAMQS RVGATASQMH SHSQSQVNEE  540
QQTSTHSTGG PGSQLTSEVL SGQGGLSKNL MEWQMLYQQQ ARNSWESSSR EESQRARLGF  600
GVDSMRAPST QSKFPPPTNG MLLRNLMGLE ALPQDQNRRG GESSCSGNGG LLGQGMPSSG  660
SMMSTSGFEG GGSSAYQSGD GRALNSPPMS NSAYQQQGQQ GGQGGQGSVD RGAVVDSPKN  720
SVGESEEASS KSSAYDPVLQ GELSRSGILY MSPGSGSQGK MGSYVESNPM SPWISSNAAT  780
VQGLAGRSNL SMGGHMGSGP IFAHSWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.146210.0protonema| sporophyte
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755920.0AB675592.1 Physcomitrella patens APB4 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
RefseqXP_024396532.10.0uncharacterized protein LOC112292371 isoform X2
TrEMBLG5EM170.0G5EM17_PHYPA; AP2-like ethylene-responsive transcription factor
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5