PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_23110V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 419aa MW: 43607.7 Da PI: 9.7609 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 93 | 137 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Pp3c15_23110V3.1.p 93 PWTEDEHRLFLLGLQKLGKGDWRGISRNFVTTRTPTQVASHAQKY 137 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.294 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.66E-17 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-18 | 89 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.4E-11 | 90 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.87E-9 | 93 | 138 | No hit | No description |
Pfam | PF00249 | 5.2E-11 | 93 | 137 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MSRRCSHCNL NGHNSRTCSD RGVRLFGVRL TDSVSSMNMR KSVSMNNLSH YTSAHNPPSP 60 PEHSESGAAP DGYVSDGLVQ TSNNARERKK GVPWTEDEHR LFLLGLQKLG KGDWRGISRN 120 FVTTRTPTQV ASHAQKYFIR QSNMNKRKRR SSLFDIVSTS GVPSIAEEST CMGDEEQTNP 180 LHQLSLGQNR MYPSGVLYEP SSVAGYGVSV GGFAVPKHMS PPMALPLMSV GNAMGMGADG 240 VTEVVGMGYK VEHLARSGME GAGMSYGMER SGMERGGAGV AVAAGAGLSL GGSAGAGRIP 300 YSFTSSGGGG VGSVSTAQAP GQGQAQQGSS SRGGGSYGAN PAIVRPTAKV GGASSAATKM 360 EEDGRDIAQL RLGLSPPEPS QLTAKLLEAP SRHSSAFHVN TSFDGSSIQQ GVNAISVV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396943.1 | 0.0 | uncharacterized protein LOC112292572 | ||||
TrEMBL | A0A2K1JE79 | 0.0 | A0A2K1JE79_PHYPA; Uncharacterized protein | ||||
STRING | PP1S66_90V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-57 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_23110V3.1.p |