PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_23090V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 419aa    MW: 43554.7 Da    PI: 9.7609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_23090V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-1393137347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Pp3c15_23090V3.1.p  93 PWTEDEHRLFLLGLQKLGKGDWRGISRNFVTTRTPTQVASHAQKY 137
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.796320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.29486142IPR017930Myb domain
SuperFamilySSF466893.66E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1889141IPR006447Myb domain, plants
SMARTSM007176.4E-1190140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-1190136IPR009057Homeodomain-like
CDDcd001676.87E-993138No hitNo description
PfamPF002495.2E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSRRCSHCGL NGHNSRTCPD RGVRLFGVRL TDGISSMNMR KSVSMNNLSH YTSTHNSPSP  60
SEHSESGAAP DGYVSDGLVQ TSNNARERKK GVPWTEDEHR LFLLGLQKLG KGDWRGISRN  120
FVTTRTPTQV ASHAQKYFIR QSNMNKRKRR SSLFDIVSTS GVPSIAEEST CMGDEEQTNP  180
LHQLSLGQNR MYPSGVLYEP SSVAGYGVSV GGFAVPKHMS PPMALPLMSV GNAMGMGADG  240
VTEVVGMGYK VEHLARSGME GAGMSYGMER SGMERGGAGV AVAAGAGLSL GGSAGAGRIP  300
YSFTSSGGGG VGSVSTAQAP GQGQAQQGSS SRGGGSYGAN PAIVRPTAKV GGASSAATKM  360
EEDGRDIAQL RLGLSPPEPS QLTAKLLEAP SRHSSAFHVN TSFDGSSIQQ GVNAISVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397202.10.0uncharacterized protein LOC112292689
TrEMBLA0A2K1JE840.0A0A2K1JE84_PHYPA; Uncharacterized protein
STRINGPP1S66_90V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-60MYB_related family protein