PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_21740V3.1.p

Common Name

PHYPADRAFT_110468

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 319aa MW: 36241.5 Da PI: 7.1529

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_21740V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.1	8.5e-17	58	141	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt e+l+L +arre+ +r+rrg+ +++ +W+++ ++ +++g+++s++qC++kwe l ++kk++++ek+ +++s + Pp3c15_21740V3.1.p 58 WTAAEILVLQAARREDFDRVRRGNlkerhkSAQERWKWIEDYGWSQGVHKSAQQCQDKWELLVSEFKKVNDHEKNLPGGQKSYW 141 *******************985444555999***************************************9865555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.133	54	120	IPR017877	Myb-like domain
Pfam	PF13837	8.2E-13	57	143	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MADHMGPPPC GLGHHALADA LVDDRDHHNH TGSEDDVFGD RRKGDVFRKG RIYKKGNWTA 60 AEILVLQAAR REDFDRVRRG NLKERHKSAQ ERWKWIEDYG WSQGVHKSAQ QCQDKWELLV 120 SEFKKVNDHE KNLPGGQKSY WDMSKEERKK TVMPPNFYKD VYNALSEWYC KGRPADPGEL 180 DTSGPLRHTG VSHRSLSLQA ASDAEFSVPE DSDGDGDPES LLRKQKRKSS LFPLSEEYGL 240 ACILKINNKR VIDAMMESED RKDKRHREDI DMEEKKLDFE REKFRGTMQL GAGYINALNS 300 IGDGLKQLGA ALSATSQA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.7826	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396482.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024396483.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A9TNA0	0.0	A9TNA0_PHYPA; Predicted protein
STRING	PP1S271_34V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-24	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c15_21740V3.1.p
Entrez Gene	5943304

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]