PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_5130V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 695aa    MW: 78030.9 Da    PI: 8.6461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_5130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07484524340
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        +W+++E +ll +av+++++g   +W+ +++++g++R+ +++
  Pp3c14_5130V3.1.p 484 PWSKQEVDLLRKAVQKFPKGtsqRWEVVSNYIGTNRSVEEI 524
                        8***********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006253.9E-78098IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.5E-2093197IPR001623DnaJ domain
SuperFamilySSF465656.28E-1993174IPR001623DnaJ domain
SMARTSM002713.6E-1595170IPR001623DnaJ domain
PROSITE profilePS5007617.80196178IPR001623DnaJ domain
PfamPF002262.2E-1696175IPR001623DnaJ domain
CDDcd062578.23E-1296167IPR001623DnaJ domain
PRINTSPR006253.9E-7119134IPR001623DnaJ domain
PRINTSPR006253.9E-7150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.435477520IPR017877Myb-like domain
SuperFamilySSF466893.04E-7478525IPR009057Homeodomain-like
SMARTSM007171.4E-5481534IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-4483524IPR009057Homeodomain-like
PfamPF002498.2E-7484524IPR001005SANT/Myb domain
CDDcd001671.28E-4484524No hitNo description
SMARTSM007178.2E-7634686IPR001005SANT/Myb domain
SuperFamilySSF466893.28E-9635683IPR009057Homeodomain-like
PROSITE profilePS500906.864638684IPR017877Myb-like domain
CDDcd001677.19E-5638680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MPGLEDRLYL TYFPADIPEV LPEYVASNSK CFPRLGLEPA GICFHEAAKR ARGVTRDPVE  60
AEAVPEKKEK GGESPSVDSY QFKGKKKSGD GAETQDHYAL IGLSHLRFLA TEDQIRKSYR  120
ETALKYHPDK QAALLLAEGT EEKKEIKKEE IDRHFKAIQF AYEVLIDPVK RRAYDSIDEF  180
DDEIPSDCAP GEFFKVFGPV FARNGRWSTV QPIPSLGDND TDIGTVDSFY DFWWSFKSWR  240
EFPHADEFDL EQAESREHKR WMERQNAKFR EKAKKEEYAR IRLMTENAYK KDPRIARRKE  300
EEKAEKLRKK QAKFQAKREK EEEAARALEE ERLRKEEEDR KAAEEASAQK KLKEKEKKLL  360
RKEKARLRAV AAAVVAKKES GVSEDDVENF CTSLEISLLR GLCEKLEGMK EVNEQTEYLR  420
NVMSGAEVIV SSDSAAAGTP IRLNSSPVIS VVDAATPTVN DKIASDVVAE KGKQTTRPVV  480
EERPWSKQEV DLLRKAVQKF PKGTSQRWEV VSNYIGTNRS VEEILRGVKT VLLQKPDSSK  540
VFDSFLQKRK VKNVVIDSPL STREDGVSGE LSSTKVVDNG TVNTEKKQES GAKQTMSAGQ  600
SAIEKSSQNG GQPKGDSLKP AQSNGAVANG AATEGEGWSE GQEVALVKAI KAFPKDTANR  660
WDRIATAVPG KSKAQCFKKF AELRDSFRST KKAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1819229520123Zuotin
5dje_B1e-1819229520123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.156900.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394672.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2K1JGF60.0A0A2K1JGF6_PHYPA; Uncharacterized protein
STRINGPP1S150_13V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.14e-94DnaJ domain ;Myb-like DNA-binding domain