PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_26270V3.1.p | ||||||||
Common Name | PHYPADRAFT_170944 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 470aa MW: 49376.4 Da PI: 6.8063 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.7 | 6.1e-34 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pp3c14_26270V3.1.p 52 KQRLRWTPELHDRFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 106 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.051 | 49 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-33 | 50 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-17 | 51 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-26 | 52 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-9 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-25 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MYQNKKFSTT SLMPQRSASQ APEPRGSSAA GASTNSAGSP GGGSGGGGSA AKQRLRWTPE 60 LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESLSDGGKS 120 DKKKNQADLL PALDATSGIQ ITEALRMQME VQKRLHEQLE VQRHLQLRIE AQGKYLQKII 180 EEQQRVGALN NGASTTADTT TAPTTTEATQ GQTGSVVETK PALPLTNEAP TSNSVPTAPV 240 SSSSLGLTQA TILTSQQPSQ TQYGYETFTN PPVLEGSSVQ GASKRTRMED GAGQPVTGQL 300 ETQQVSGVTQ PGGPFMQPGH IQGSCGVFHS NQSDFASGST FSPRQGGGSF TQAPPLSQQA 360 YSQQQSLEGV FNTQSFLPAN DADTSMPSQV QGTGAQPPPD SSTSGSTRQP PKLSGELDTG 420 SFLTNDKEAT LPTSERGRGD GGPAPLPQVG MYEQWEHVGS GGHLFNQDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4715 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394212.1 | 0.0 | myb-related protein 2-like | ||||
TrEMBL | A0A2K1JK89 | 0.0 | A0A2K1JK89_PHYPA; Uncharacterized protein | ||||
STRING | PP1S269_36V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-69 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_26270V3.1.p |
Entrez Gene | 5943182 |
Publications ? help Back to Top | |||
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