PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_21120V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 480aa    MW: 50674.9 Da    PI: 6.7274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_21120V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029217239123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cg+ F ++  L  H++ H
  Pp3c14_21120V3.1.p 217 YECQFCGREFASSQALGGHQNAH 239
                         99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-6213244No hitNo description
Gene3DG3DSA:3.30.160.605.3E-5215243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-5217241IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.695217244IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MTKDSNQSGA QASPYRLSMS NGGRDKEVEL DAQSPGITSA GPSSRPGSAA SDRGCSDSVS  60
PTSGGHTTVD AQVEAGVGTS AASVGNSQDT PSPRVLDGAG NWDRSGTAVK LFGFDIKHPP  120
SAEKNSGESS LSTPLKNVED PSLIDQVPCE ANESQSVVFR FIAKDADAAQ NSSVDDAAVE  180
QCDDDVAECA GGSSLHLSRG HTDCSDSTAP LWENRKYECQ FCGREFASSQ ALGGHQNAHK  240
RERQEAKRAQ LQANRLAAAN SDRSTVWGGR GGYGIRQYHG GQQLVTPHVS RLVIPHSSQL  300
SGNHGSHGAQ LMPPHAPASM STYEGMAPMA HSMSLMNGGV PNHTFPHPMT RGMQCPPSPY  360
FFYYGLLGMS LPGSRPTFGS MYGEHMRYAE FPSMFAVLPQ GMHSSQPWSH SQLQQGGMPS  420
GRFLVKGMDG MRTENLVRPR PLAQAPGALQ THEQRPFSGG GAPNNVLDLQ LGLGNSPTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395192.10.0uncharacterized protein LOC112291664
TrEMBLA0A2K1JIN50.0A0A2K1JIN5_PHYPA; Uncharacterized protein
STRINGPP1S34_257V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.17e-12C2H2 family protein