PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_11320V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 436aa    MW: 48103.9 Da    PI: 5.9181
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_11320V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.88e-22196253259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dD   W+KYG K++++s+f r+YY+C + +C++kk v+ + +dp+++e+tY g+H+++
  Pp3c14_11320V3.3.p 196 DDHRGWKKYGNKTIQNSNFCRGYYKCGMVDCRAKKMVQPTVQDPSIFEVTYVGKHTCS 253
                         56778***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-22189253IPR003657WRKY domain
SuperFamilySSF1182902.35E-21193253IPR003657WRKY domain
SMARTSM007747.3E-21194254IPR003657WRKY domain
PROSITE profilePS5081116.042196250IPR003657WRKY domain
PfamPF031065.1E-19196252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSSPASPLPV SLIKEHLDLS NPFTDSSTYA PRLCDAWSIG NLYMNKTSQI GQLPTSIAQA  60
DDEKQLQQSM GLLSSNEEHQ QGQDFAELPS PMLDNTWSML SEAQVTNLED SLVPVEAPHQ  120
SSSTCQLKLP DADKDGRGFS EHDDRNIGSK FNGRSGLRQS SLKRDREEFS EGETTVTVVF  180
QKMKPGRDKK KAIPDDDHRG WKKYGNKTIQ NSNFCRGYYK CGMVDCRAKK MVQPTVQDPS  240
IFEVTYVGKH TCSGSSRRRH RSRTVAPPPH PPPTIEGIDV LDGERQSSAD EKAGSSGALY  300
TSKPSVNGSS DVRVQTKIAR LLKNHGGNGV IEAVKANSLT ARSNNKGSPE DDQVSKDSKS  360
WSSRSSKQML LDNNSVEPND SNETDPVPED HDHEEGTYLQ HSYQHQQSSY SFQQESLLWP  420
EINMDASTLS TADPN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394073.10.0probable WRKY transcription factor 35
TrEMBLA0A2K1JHC60.0A0A2K1JHC6_PHYPA; Uncharacterized protein
STRINGPP1S36_309V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-17WRKY DNA-binding protein 55