PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_11320V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 367aa    MW: 40584.5 Da    PI: 6.2425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_11320V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.16.2e-22127184259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dD   W+KYG K++++s+f r+YY+C + +C++kk v+ + +dp+++e+tY g+H+++
  Pp3c14_11320V3.2.p 127 DDHRGWKKYGNKTIQNSNFCRGYYKCGMVDCRAKKMVQPTVQDPSIFEVTYVGKHTCS 184
                         56778***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-22120184IPR003657WRKY domain
SuperFamilySSF1182901.83E-21124184IPR003657WRKY domain
SMARTSM007747.3E-21125185IPR003657WRKY domain
PROSITE profilePS5081116.042127181IPR003657WRKY domain
PfamPF031063.9E-19127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGLLSSNEEH QQGQDFAELP SPMLDNTWSM LSEAQVTNLE DSLVPVEAPH QSSSTCQLKL  60
PDADKDGRGF SEHDDRNIGS KFNGRSGLRQ SSLKRDREEF SEGETTVTVV FQKMKPGRDK  120
KKAIPDDDHR GWKKYGNKTI QNSNFCRGYY KCGMVDCRAK KMVQPTVQDP SIFEVTYVGK  180
HTCSGSSRRR HRSRTVAPPP HPPPTIEGID VLDGERQSSA DEKAGSSGAL YTSKPSVNGS  240
SDVRVQTKIA RLLKNHGGNG VIEAVKANSL TARSNNKGSP EDDQVSKDSK SWSSRSSKQM  300
LLDNNSVEPN DSNETDPVPE DHDHEEGTYL QHSYQHQQSS YSFQQESLLW PEINMDASTL  360
STADPN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394073.10.0probable WRKY transcription factor 35
TrEMBLA0A2K1JHC60.0A0A2K1JHC6_PHYPA; Uncharacterized protein
STRINGPP1S36_309V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-17WRKY DNA-binding protein 55