PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_9170V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 722aa    MW: 76178.6 Da    PI: 5.8608
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_9170V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14.2e-33413467155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+rlrWtpeLHe+Fv+av+qLGG+e+AtPk++l++m+v+g+t++hvkSHLQkYRl
  Pp3c13_9170V3.3.p 413 KTRLRWTPELHEKFVDAVAQLGGPERATPKAVLRIMSVEGITIYHVKSHLQKYRL 467
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.476410471IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-30411467IPR009057Homeodomain-like
SuperFamilySSF466894.48E-17412468IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24413467IPR006447Myb domain, plants
PfamPF002491.2E-8415466IPR001005SANT/Myb domain
PfamPF143796.0E-20496541IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MPTQMPPLLP TSAARQRSHS NSSSPLASPG MLQSLPPLGA QCPSQLFLPT SVGGVRGIQP  60
LARDATPPEQ PNYYSAVPGV RPSSWETSSP HVITSPSITA QYHPLNISKY TPPHVAAPTL  120
RNIHHGLAFV TLQEGSFPSF DIPSFHNLSA TYAQQWPSTN GQWVVTESSQ SAVPWPSSTI  180
SMGASSSSTG GSTAAAHAQL SALVPTNSCG LNFHCLRGGV TAATTDEGRG FSIIGRDDGT  240
GSGMRMELQE IGSGRGGDST SLEQYANSRL GITPEINAAN LCHPLQVLLE GASDQRILRD  300
SEGSSQTAEA SVNIPEWPEP NWMEIFTDPY DESVPLDTIN GRVFQAPANL PAPPPLIPAR  360
DLRTDWQHSG AVSEGSPGTS GTPTSVGASV GASVGVSAIA STTASTDEAA SVKTRLRWTP  420
ELHEKFVDAV AQLGGPERAT PKAVLRIMSV EGITIYHVKS HLQKYRLIPE TSEDARNDRK  480
RNDSSFGGMD INSSLQMTQA LQMQMEVQKR LHEQLEIQRE LQLRIEAQGQ SLKMMFEAQT  540
KASGAFGSHP DLSSMEHSEG GSDAPNSQDA PAAQSSHQVP ETLSSPQDAS GSSASQEPST  600
KRARVDVVPN PNLRMLHSKD TTTAATPKTE LLHSCSAPPP PPPPDRTASC ESSPQGSSPS  660
RLAEGLSSSS LADGTPQTMA PMTTDQGAGL TPQRHGTTSL QSCMPQQSGS MTLTSLQASV  720
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23413466154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23413466154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23413466154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23413466154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23413466255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.126030.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392420.10.0uncharacterized protein LOC112290437 isoform X2
TrEMBLA0A2K1JL990.0A0A2K1JL99_PHYPA; Uncharacterized protein
STRINGPP1S52_33V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-55G2-like family protein