PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_16160V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 498aa    MW: 53677.2 Da    PI: 7.2564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_16160V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.2e-09158180225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k ++C+++++ G C +G++C+F H
  Pp3c13_16160V3.1.p 158 KPKPCSYWLK-GNCTRGETCNFLH 180
                         778*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-74064IPR000571Zinc finger, CCCH-type
SMARTSM003560.0414065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-54363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3434466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-7154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347156183IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6156182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6157181IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6158180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.8E-11186279IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.06E-49187235IPR017986WD40-repeat-containing domain
SMARTSM003204.7E-4187226IPR001680WD40 repeat
PROSITE profilePS5008213.215194235IPR001680WD40 repeat
PfamPF004000.035194226IPR001680WD40 repeat
PROSITE profilePS5029424.336194397IPR017986WD40-repeat-containing domain
PRINTSPR003202.7E-7213227IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780213227IPR019775WD40 repeat, conserved site
SMARTSM003200.0021266304IPR001680WD40 repeat
PfamPF004000.017271304IPR001680WD40 repeat
PROSITE profilePS500829.339273313IPR001680WD40 repeat
SuperFamilySSF509788.06E-49273495IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.2E-37280488IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.8E-4311348IPR001680WD40 repeat
PfamPF004000.035316347IPR001680WD40 repeat
PROSITE profilePS5008212.179318357IPR001680WD40 repeat
PRINTSPR003202.7E-7335349IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780335349IPR019775WD40 repeat, conserved site
SMARTSM003202.4E-5351388IPR001680WD40 repeat
PfamPF004004.6E-4353387IPR001680WD40 repeat
PROSITE profilePS500829.205358397IPR001680WD40 repeat
PRINTSPR003202.7E-7375389IPR020472G-protein beta WD-40 repeat
SMARTSM0032052408446IPR001680WD40 repeat
SMARTSM003202.1449486IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMAGMEVDDG PTKVGSKRNH SRSGNIAGAG GGGGLGGRGH VQQVCRYWQE GRCIKGDECQ  60
WLHPGSAGST GRWTSTGSGK RPNIVYDARD REGRENREYN VGGWGYGGGG FSSGSNQGRP  120
RNVSARWGRG GRGGRGGRGN LDQRDSRAYE SGRSHSLKPK PCSYWLKGNC TRGETCNFLH  180
AHTTAPDMEM KTQLVGHEKA IRAIVLPEGH SQLYTGSQDE SVRVWDCATG QCTNVAPMGG  240
DVGALIFAAG WLFVGLPNEV KVINMATLQQ ASLSGPKGQV HALAVTEDGL LFAGTQDGTI  300
LIWKFSTTTN QFEPAASMSG HTGPVVTLML IANRLYSGSM DNTIRVWEIA AVQCVQTLEG  360
HTNVVMDLLC WDSFLLSCSL DGTIKIWAVN TAGQLELTFS HPEEENQPDS RNITLAGALK  420
MCGCTDKAGK PVLLCSYNDN TVRLYDLPTF TERGQLFSRE EVRALQVGPS SLLFSGDSRG  480
EVKVWNWIET QPEAVVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201944866322Tako8
6g6n_A1e-201944866322Tako8
6g6n_B1e-201944866322Tako8
6g6n_C1e-201944866322Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391880.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A2K1JM600.0A0A2K1JM60_PHYPA; Uncharacterized protein
STRINGPP1S374_36V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-133C3H family protein