PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c13_13930V3.1.p

Common Name

PHYPADRAFT_65143

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 353aa MW: 40879.6 Da PI: 8.5739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_13930V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.5	2.5e-11	17	99	2	84
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++ev aL+++ ++ +++r++l k +We v + + ++ +r++ q k+k+++l+kryk++k ++++ +++ t++++d+ Pp3c13_13930V3.1.p 17 WIDEEVEALLDVWGDTYIHVKRENLGKRHWETVVREVnARLTHQREQPQMKNKIDSLKKRYKREKLSKGES-DRNLITWKWYDR 99 ***********************************6667779*******************999985.666669999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-16	14	102	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDGTSGLQSL GSERETWIDE EVEALLDVWG DTYIHVKREN LGKRHWETVV REVNARLTHQ 60 REQPQMKNKI DSLKKRYKRE KLSKGESDRN LITWKWYDRC DMLWGTSTRE MSSVGMGLVR 120 GAHQHQHRVE AAHAHSVDIM QHQDSSRLVP LQAAMQPEVH LNDDRHGLNL KNVAASRIGD 180 CHEEHCPPNA DQTLPSPCSQ CRGNPGEGHG RENVKRRKLG AGITAANLAK IVQGFADTYA 240 RVEQAKMEMN MVMELRRLEF MERVELKRQE CEEKYLERKL KMEERRLELQ QKLTDRKLEM 300 QEKHMERRES LKLEIMRLRL QVAGQPKKTP VVEQQAVQTC EKFSSSNITT CT*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDGTSGLQSL GSERETWIDE EVEALLDVWG DTYIHVKREN LGKRHWETVV REVNARLTHQ  60
REQPQMKNKI DSLKKRYKRE KLSKGESDRN LITWKWYDRC DMLWGTSTRE MSSVGMGLVR  120
GAHQHQHRVE AAHAHSVDIM QHQDSSRLVP LQAAMQPEVH LNDDRHGLNL KNVAASRIGD  180
CHEEHCPPNA DQTLPSPCSQ CRGNPGEGHG RENVKRRKLG AGITAANLAK IVQGFADTYA  240
RVEQAKMEMN MVMELRRLEF MERVELKRQE CEEKYLERKL KMEERRLELQ QKLTDRKLEM  300
QEKHMERRES LKLEIMRLRL QVAGQPKKTP VVEQQAVQTC EKFSSSNITT CT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.15990	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392317.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2K1JLT4	0.0	A0A2K1JLT4_PHYPA; Uncharacterized protein
STRING	PP1S5_14V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	4e-13	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pp3c13_13930V3.1.p
Entrez Gene	5915909

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]