PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_5150V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family BBR-BPC
Protein Properties Length: 705aa    MW: 78531.4 Da    PI: 8.3085
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_5150V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind246.61.6e-7538970421301
          GAGA_bind  21 kenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtks 107
                        k+  ++++m +iaerda++ e+ +al+ek aa+aerd a lqrd a a+r++a++ rd +l+al   e++++      ++ +  ++++g+k 
  Pp3c12_5150V3.2.p 389 KSASSIEIMDIIAERDAALMEKSTALAEKMAAYAERDAAILQRDIASADRDAAILTRDAALAALARLERKSSgrgrrPSQTALDESMHGSKL 480
                        6677899*********************************************************9999888777665444455677889999 PP

          GAGA_bind 108 idslqqlse..........................pqledsavelreeeklealpieeaaeeakekkkkkkrqrak.kpkekkak..kkkkk 170
                        ++ ++  ++                           +l+      r++e + +  ++++++ ++ ++ ++++++++  pk++++    ++ +
  Pp3c12_5150V3.2.p 481 LQRMDLAEHsafssefhptaanpshsgimlldpdsAHLQGVHRFSRDKESQIEIFVRTKRKATEMAEATHRGKHPRaAPKKSRNWpvTHQGQ 572
                        99999988867777777777777776663333222222222111222222222222332222222222222222210222222222222223 PP

          GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslD.estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261
                        +++++++++++ a+e+   + ++ +lv   +    +   P+P CsCtG+ +qCY+WGnGGWqSaCCtt iS++PLP ++k+rg+R+agrKmS
  Pp3c12_5150V3.2.p 573 QPVQERESQAQVANEEEGGQIREPELVSSRIFRSqTVPTPIPYCSCTGMNQQCYRWGNGGWQSACCTTLISMFPLPLNPKKRGSRLAGRKMS 664
                        3334444444444455667777778877666433033456778************************************************* PP

          GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         gaf klLekL +eG +++ pvDL++hWAkHGtn++vt+r
  Pp3c12_5150V3.2.p 665 AGAFDKLLEKLVSEGVNINLPVDLREHWAKHGTNRYVTLR 704
                        **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.207.2E-142794No hitNo description
SuperFamilySSF561122.43E-7030291IPR011009Protein kinase-like domain
PROSITE profilePS5001141.13532290IPR000719Protein kinase domain
PfamPF000691.1E-5032290IPR000719Protein kinase domain
SMARTSM002206.4E-6732290IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.104.8E-5495297No hitNo description
SMARTSM012262.5E-59377704IPR010409GAGA-binding transcriptional activator
PfamPF062171.5E-69381704IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEGQGKEQKN GVGEEGGDEE GRRGYPLSAS DYRIMEELGR GASCTVYSAL CLPYNELVAI  60
KVLQLDEGTR ISSDFWTASK SRIQHPNVLT AYCSFTTSHN VWVVMPFMAG GSCLDIMKAA  120
FSNGFDESVV CTFLKESLMG LNYLHHHGRI HQDVKAGNIF VDGNGRVKLA DFGISTCILN  180
AGDQQQSRSS LLRSCYWMAP EMIEQVHLYD SKADIWSFGI TALELVHGIV PFSKYPMKVF  240
FNTLQNKISE MNCACFKMFS KSFKDMIAIC LAKDPSRRPT TEQLLRHPFF KQARSPEYIY  300
QHVLDGLSSL GERSKNLKII EAAQLALKKS PHSKEKLSQG EYLRGLHNWI CNAHDIRKTE  360
TEVAIFKGGP ADLAAQMDVD WESSCLHSKS ASSIEIMDII AERDAALMEK STALAEKMAA  420
YAERDAAILQ RDIASADRDA AILTRDAALA ALARLERKSS GRGRRPSQTA LDESMHGSKL  480
LQRMDLAEHS AFSSEFHPTA ANPSHSGIML LDPDSAHLQG VHRFSRDKES QIEIFVRTKR  540
KATEMAEATH RGKHPRAAPK KSRNWPVTHQ GQQPVQERES QAQVANEEEG GQIREPELVS  600
SRIFRSQTVP TPIPYCSCTG MNQQCYRWGN GGWQSACCTT LISMFPLPLN PKKRGSRLAG  660
RKMSAGAFDK LLEKLVSEGV NINLPVDLRE HWAKHGTNRY VTLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d9h_A1e-752433012334STE20/SPS1-related proline-alanine-rich protein kinase
5d9h_B1e-752433012334STE20/SPS1-related proline-alanine-rich protein kinase
5dbx_A8e-76243305327STE20/SPS1-related proline-alanine-rich protein kinase
5dbx_B8e-76243305327STE20/SPS1-related proline-alanine-rich protein kinase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.193100.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822800.0FJ982280.1 Physcomitrella patens GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.10.0serine/threonine-protein kinase 24-like
TrEMBLA0A2K1JPJ50.0A0A2K1JPJ5_PHYPA; Uncharacterized protein
STRINGPP1S56_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.12e-44basic pentacysteine 3