PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_5100V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 922aa    MW: 97067.4 Da    PI: 5.9038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_5100V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089375399123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c12_5100V3.3.p 375 YVCHydGCIKSFSERSKLKRHFLIH 399
                        99*******************8877 PP
2zf-C2H215.93.8e-05407429323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C    Cgk Fs   nL++H++tH
  Pp3c12_5100V3.3.p 407 CVyeGCGKAFSLDFNLRSHMKTH 429
                        66669*****************9 PP
3zf-C2H211.70.00082434459123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++Cp   C+k++ + + L+ Hi + H
  Pp3c12_5100V3.3.p 434 HECPydGCDKRYCQEYKLRAHIVKeH 459
                        78********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-5345382No hitNo description
Gene3DG3DSA:3.30.160.604.5E-6346370IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2346370IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408346370IPR007087Zinc finger, C2H2
PROSITE patternPS000280348370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-13373397IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.815375404IPR007087Zinc finger, C2H2
SMARTSM003550.0065375399IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280377399IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-14385432No hitNo description
Gene3DG3DSA:3.30.160.601.9E-20398432IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.819405434IPR007087Zinc finger, C2H2
SMARTSM003550.027405429IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280407429IPR007087Zinc finger, C2H2
SMARTSM003550.02434459IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5436455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280436459IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MDRLDEASGG ADLAVQGENC LKQIASNYVE EEDGENCSGE EEGVGRENGA DSAAPGGHGG  60
GGRHGLGESV GVEVRDSAGH SGNESERREA SGESCDEEQG GGSSGEEEEE DGDDEEEGEE  120
GEQRHGGASV AENGFANLDE RDEGKAANSE SYSGGVEGLA VERENTDSAE GTRDRVDAAE  180
KSVTQSECDP EGGGVQGGPT LRRKRGRPLK SSERQTSIRA GPITPKLEEP RSVRINRGVK  240
RRYPGDESED DSLPKRVRVR SITNICGDFA QPIKGEDMSV EEAVEANPAR KRGRPRRGNR  300
VEGVAKADEA EVSAVPSSGK RKTIEAVLDS ESMKWACHGR NAGPIFACNA EGCKKRFVEA  360
ASLYAHARVH GDRPYVCHYD GCIKSFSERS KLKRHFLIHT GEKPFLCVYE GCGKAFSLDF  420
NLRSHMKTHT GDYHECPYDG CDKRYCQEYK LRAHIVKEHN KSGKGTKKLA KVVGNGGGGL  480
VSVAGANVRD AAAAKKRAVV AALQAKRSKL ESMKEARESR IAELEEEKER EAFELSRIER  540
LLKKVEGEQR RVEGQGGSPA MSVSASEEEE EEEEGEEGEG ACPSNGTGGD TSSSDEQQSR  600
LEYTAMGEGK DVVMFAHKLP TAHQAARLVR KGKPGGFVGK SGGPGFTPNF VAARGSAVSK  660
GVLGEGSWKK VERLSRGCGA SPCGGGKVKS GQQEKRANGE AWSQGESSVS GAGKANGGVG  720
GKGGGGQAEG GSGKARVVGT KKSGASTGRG GARRTNASTG TNEKGVRVSG GAEMARMDGK  780
GAKEVGTVST QQQQQGGGRE STSGAFLVSM NPILVSSDHG FSPTDARFLA NEGFPSLAQG  840
LLRERLQAKD GVKSMSGSAC PPKEKAYRSM NEVLHSAAEA GFVGGGGGSE EFGGEQAAPE  900
QSFEPSAAQL FTYHEQPRLV D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-343094562117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RGVKRR
2719725GGKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391375.10.0uncharacterized protein LOC112289894
TrEMBLA0A2K1JPJ40.0A0A2K1JPJ4_PHYPA; Uncharacterized protein
STRINGPP1S577_1V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1529224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-44C2H2 family protein