PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_4860V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 1161aa MW: 126477 Da PI: 9.9144 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.2e-07 | 624 | 646 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +f+r G Ck+Gd C+FaH++ Pp3c12_4860V3.6.p 624 PQCLDFSR-GRCKRGDGCRFAHSE 646 6799****.*************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF109905 | 5.63E-16 | 94 | 166 | IPR000061 | SWAP/Surp |
SMART | SM00648 | 1.4E-8 | 112 | 171 | IPR000061 | SWAP/Surp |
PROSITE profile | PS50128 | 12.178 | 114 | 162 | IPR000061 | SWAP/Surp |
Pfam | PF01805 | 3.6E-10 | 115 | 165 | IPR000061 | SWAP/Surp |
PROSITE profile | PS50103 | 14.568 | 620 | 647 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 623 | 646 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 626 | 646 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1161 aa Download sequence Send to blast |
MFRPGPGQES PQGTTRPSFP SPPRSTMPRP SQFGPPPSMH GRGSPLVPPP GPSQHFSSQY 60 PGYPGSELGD GQPQPHPPGS AAIDRMPSSP LKAAERRVVE ERPMGPQDQE MLKNIDILAS 120 FVVKNGPQFE DMARQKQAND PKFGFLFGGG PGSDAALGQA YYEWKKRWLI AAANSPADAL 180 IKPHSNNESK VDTHSPLSEA PLSPDGSDMN MEDDFGEPSQ AADIKSDQVQ ESESNLHAKR 240 EPTSSSRTET NSRPQGAQNP RVPTPLSVLH QSNSATASRT SPQVPSQPAI SNRPQLDTAH 300 DELPKRKDTR RRTGFDRPCM EDVTPVSSSP VQTKPQVLDS SAAAEVQRSK TSSRVSRWGL 360 QDPTPLHDSS RRPSFSVDAQ NNTFQQDPVR SLVKEVDTSE LGDRLEAVTP QRDDDSEHET 420 KGAKDSLLKD TFSRLEDRDS TDYPTKPDRY QTKESILRSE DRKMKDSDDR RARDSPSTLV 480 DLSIRDGSPK ISKQQRDVSE PDPGSKAPTV DEFGRFVRPG GSESDAEDSH NDRKRRNGSG 540 SRSRSPSDNR RRRRSRSRSP RRHSRRSHSR SRSPRRRRSR SKSPHGRDSR RGGDGARGWE 600 RGHQDRSDRG GRKGGRGDRG GGPPQCLDFS RGRCKRGDGC RFAHSEVAVE STNEGRYERG 660 GGRGGRGSRQ VDRQESHDSG RIHGGSSSKP GWGEDISRSR RGWEPNDCKE KIYKKESRKS 720 LEEMPRAQSE TSPVSDYGNE LGAKPSEPPY PGDPGGLPTL AQLPPPPPPL PRSQGFSSAS 780 IPPQQSYMGY PPSQPGFNLP PPPPTNQNRH TSMSQQPSYG GSETQQPALA PPQVSSGLAN 840 LPQLRGQALT PSSRPGYTWQ TTSTAAPASM AYTGQPVQAT GAQSNYGLPP PPPTAYTNSL 900 SQYQLPQQTQ VGQSGEQFNM MADRPELGRP TAADAGVKGG QENISISSMD QWKGNGGNGT 960 NRHMDDVILE SVSPGLPGHH HMENVSPGPG PGLVMESVSP ALVAHASNAS AVPQQAMTVS 1020 TFSSSQHDNP PGVGLESVSP APEEPQNWSP GGGDETNKGD KRADKRNKRD KEDHKIRGLT 1080 LLRTAVADHV KETLKPTWRE GQMSKEAFKT IAKKAVDKVL SVIKPHQVPN TDEKVAVYME 1140 NARPKITKLV EGYVDKYVKS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 533 | 553 | KRRNGSGSRSRSPSDNRRRRR |
2 | 613 | 621 | GGRGDRGGG |
3 | 1060 | 1067 | KRADKRNK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390676.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_024390677.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_024390678.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_024390679.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
TrEMBL | A0A2K1JPI0 | 0.0 | A0A2K1JPI0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S246_16V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 6e-19 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_4860V3.6.p |