PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_4860V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1161aa    MW: 126477 Da    PI: 9.9144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_4860V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07624646427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C +f+r G Ck+Gd C+FaH++
  Pp3c12_4860V3.2.p 624 PQCLDFSR-GRCKRGDGCRFAHSE 646
                        6799****.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099055.63E-1694166IPR000061SWAP/Surp
SMARTSM006481.4E-8112171IPR000061SWAP/Surp
PROSITE profilePS5012812.178114162IPR000061SWAP/Surp
PfamPF018053.6E-10115165IPR000061SWAP/Surp
PROSITE profilePS5010314.568620647IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4623646IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5626646IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1161 aa     Download sequence    Send to blast
MFRPGPGQES PQGTTRPSFP SPPRSTMPRP SQFGPPPSMH GRGSPLVPPP GPSQHFSSQY  60
PGYPGSELGD GQPQPHPPGS AAIDRMPSSP LKAAERRVVE ERPMGPQDQE MLKNIDILAS  120
FVVKNGPQFE DMARQKQAND PKFGFLFGGG PGSDAALGQA YYEWKKRWLI AAANSPADAL  180
IKPHSNNESK VDTHSPLSEA PLSPDGSDMN MEDDFGEPSQ AADIKSDQVQ ESESNLHAKR  240
EPTSSSRTET NSRPQGAQNP RVPTPLSVLH QSNSATASRT SPQVPSQPAI SNRPQLDTAH  300
DELPKRKDTR RRTGFDRPCM EDVTPVSSSP VQTKPQVLDS SAAAEVQRSK TSSRVSRWGL  360
QDPTPLHDSS RRPSFSVDAQ NNTFQQDPVR SLVKEVDTSE LGDRLEAVTP QRDDDSEHET  420
KGAKDSLLKD TFSRLEDRDS TDYPTKPDRY QTKESILRSE DRKMKDSDDR RARDSPSTLV  480
DLSIRDGSPK ISKQQRDVSE PDPGSKAPTV DEFGRFVRPG GSESDAEDSH NDRKRRNGSG  540
SRSRSPSDNR RRRRSRSRSP RRHSRRSHSR SRSPRRRRSR SKSPHGRDSR RGGDGARGWE  600
RGHQDRSDRG GRKGGRGDRG GGPPQCLDFS RGRCKRGDGC RFAHSEVAVE STNEGRYERG  660
GGRGGRGSRQ VDRQESHDSG RIHGGSSSKP GWGEDISRSR RGWEPNDCKE KIYKKESRKS  720
LEEMPRAQSE TSPVSDYGNE LGAKPSEPPY PGDPGGLPTL AQLPPPPPPL PRSQGFSSAS  780
IPPQQSYMGY PPSQPGFNLP PPPPTNQNRH TSMSQQPSYG GSETQQPALA PPQVSSGLAN  840
LPQLRGQALT PSSRPGYTWQ TTSTAAPASM AYTGQPVQAT GAQSNYGLPP PPPTAYTNSL  900
SQYQLPQQTQ VGQSGEQFNM MADRPELGRP TAADAGVKGG QENISISSMD QWKGNGGNGT  960
NRHMDDVILE SVSPGLPGHH HMENVSPGPG PGLVMESVSP ALVAHASNAS AVPQQAMTVS  1020
TFSSSQHDNP PGVGLESVSP APEEPQNWSP GGGDETNKGD KRADKRNKRD KEDHKIRGLT  1080
LLRTAVADHV KETLKPTWRE GQMSKEAFKT IAKKAVDKVL SVIKPHQVPN TDEKVAVYME  1140
NARPKITKLV EGYVDKYVKS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1533553KRRNGSGSRSRSPSDNRRRRR
2613621GGRGDRGGG
310601067KRADKRNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390676.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_024390677.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_024390678.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_024390679.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A2K1JPI00.0A0A2K1JPI0_PHYPA; Uncharacterized protein
STRINGPP1S246_16V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-19C3H family protein