PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_24350V3.1.p
Common NamePHYPADRAFT_83876
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 687aa    MW: 73539.4 Da    PI: 7.4171
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_24350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.2e-41217293177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cq+egC+ dls+ak+yhrrhkvCe hskap+v+v g++qrfCqqCsrfh+l efDe+krsCr+rLa+hn+rrrk+q
  Pp3c12_24350V3.1.p 217 VCQAEGCKDDLSNAKHYHRRHKVCELHSKAPTVTVGGHTQRFCQQCSRFHHLGEFDEGKRSCRKRLADHNRRRRKPQ 293
                         6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-35211279IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.436215292IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-39216295IPR004333Transcription factor, SBP-box
PfamPF031105.2E-31218291IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNPSASSNEQ QGDPSWATEN WDNPGAVGSL DQASRQYTGS NRQEWEWDPM ILAQHPGSGG  60
SNDGSDGDRK NQISAGAMSS LRASYNMLSA GLPSNFTHNP LGIFSSAGIR NFGSLDGSGQ  120
ISTSANLHSV LGSSGIPGLA ATSGTGFCND IRSYERRCDF FAANMHDHRV KREEVSDGHA  180
RIGLNLGVRT YFSTEDTAVG RLGKRHRAGS PGFQVPVCQA EGCKDDLSNA KHYHRRHKVC  240
ELHSKAPTVT VGGHTQRFCQ QCSRFHHLGE FDEGKRSCRK RLADHNRRRR KPQLNASTSG  300
GTSVESIGII KACDDGHLHA GINRPNDPKS MLNMHSQKNC GSPNSVSLED SDEKPSLGAK  360
NLKLRTSGPG YCRSPGNDQQ SSHSGMQMDS QSMASSEAQT LLSAISLSPP APLVQHKSKR  420
QLTMLGGTGD YDHENSVYQL YLQGVSSSQT GPNLSLSSLE SQLGHQGGGR GQPTSVQSYN  480
GMESAVQWLR PINAQSDSMT KAVNRSGAMN MQHLISTDSK SGITSASANS SNSQEHDVQA  540
FSPSNQSLLP LESRDLSSPE WMMGSITGAQ TSRDGSHQYR PSTPMNNLSA SEQLEAGDRM  600
LALINTSNQA GSNPGNDGSN QNVLTGRSQM EFLQQQNTGA DSGGDNNSRG GGSTVNSPDL  660
KYPELQSLRP SSYGTSSIYD SHHNLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-29208291384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274291KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9683200.0AJ968320.1 Physcomitrella patens SBP1 gene for squamosa promoter binding protein 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390961.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390962.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390963.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390964.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390965.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390966.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390967.10.0squamosa promoter-binding-like protein 14
RefseqXP_024390968.10.0squamosa promoter-binding-like protein 14
TrEMBLA9SU350.0A9SU35_PHYPA; Predicted protein
STRINGPP1S118_9V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-49squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]