PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_21760V3.4.p | ||||||||
Common Name | PHYPADRAFT_234989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 346aa MW: 38066.1 Da PI: 4.5304 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 99 | 152 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe+++++ e++ +LAk+lgL rqV vWFqNrRa++k Pp3c12_21760V3.4.p 99 KKRRLTFDQVRSLERNFEMENKLEPERKMQLAKELGLRPRQVAVWFQNRRARWK 152 45578999*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.4e-39 | 98 | 190 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE++Fe+e+kLeperK++la+eLgl+prqvavWFqnrRAR+ktkqlE+dyeaL + y++lk++ + + +e+++L++e+ Pp3c12_21760V3.4.p 98 EKKRRLTFDQVRSLERNFEMENKLEPERKMQLAKELGLRPRQVAVWFQNRRARWKTKQLERDYEALAADYKSLKHDYDLVLAEKNNLKAEV 188 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Pp3c12_21760V3.4.p 189 QR 190 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-20 | 78 | 155 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-19 | 85 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-14 | 97 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.02E-17 | 99 | 155 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 99 | 152 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.6E-6 | 125 | 134 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.6E-6 | 134 | 150 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.7E-16 | 154 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAITSMGGYP CQSAMQQLIR NESSSDSLAA ILTPCSPHVG LQAPPHVGGS LEDAVLVASE 60 GSRQKRPFFA TYDAPTVEDG PVEDDEGADD SQGASQLEKK RRLTFDQVRS LERNFEMENK 120 LEPERKMQLA KELGLRPRQV AVWFQNRRAR WKTKQLERDY EALAADYKSL KHDYDLVLAE 180 KNNLKAEVQR LSGKAPTSPC ADGNQIVAGE SAQTPEVDVE TSELVARQHT SRSTPTVDVS 240 LACVKDKDFE TSGCTDGNSS DVLDADSPRT TDSSSLSAMS DHDQLIYSHE IPPPESFMGL 300 SGMLHDVTVK LEEGSGHGFH DDNSSNYFLL HLEDQAGVLP WWDWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.158 | 0.0 | gametophore| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028077 | 0.0 | AB028077.1 Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391647.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_024391648.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_024391649.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A9SRK5 | 0.0 | A9SRK5_PHYPA; Predicted protein | ||||
STRING | PP1S108_47V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-40 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_21760V3.4.p |
Entrez Gene | 5932211 |
Publications ? help Back to Top | |||
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