PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_14300V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 357aa    MW: 38310.3 Da    PI: 10.1403
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_14300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-1489133347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Pp3c12_14300V3.1.p  89 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVQTRTPTQVASHAQKY 133
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.2E-4421IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.026520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.9182138IPR017930Myb domain
SuperFamilySSF466899.72E-1884139IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1885137IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-1186132IPR009057Homeodomain-like
SMARTSM007171.6E-1186136IPR001005SANT/Myb domain
CDDcd001677.06E-1089134No hitNo description
PfamPF002491.2E-1189133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MARGCSHCGH NGHNSRTCPD RGVRLFGVRL TDGVMRKSVS MGNLSHYASP NNPSSPPSHS  60
ESGAGGDGYV SDGLVQTSNN TRERKKGVPW TEEEHRLFLL GLQKLGKGDW RGISRNFVQT  120
RTPTQVASHA QKYFIRQSNI NKRKRRSSLF DIVSETGPTP ILEEPTTKAV PDMSAPLHQL  180
SLGPNSTYPG VFYDPNSSHG FIRPFMLPPT SLAVPIMSMG PVALGASEQI PETSAVNFNG  240
DAARAMRPMG IPVSGPSGAM GIPYPFPMFS MLPRGYNRPV NSADSKVLRP TAKLSTEPLN  300
VGVDETKDMS QLNLGLSTPE PSQLTLKLLD QPSRSSSAFH VSTSSINSSS NAIGVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.82360.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390573.10.0transcription factor KUA1-like isoform X1
RefseqXP_024390574.10.0transcription factor KUA1-like isoform X1
TrEMBLA0A2K1JQS50.0A0A2K1JQS5_PHYPA; Uncharacterized protein
STRINGPP1S70_203V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-67MYB_related family protein