PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_1320V3.3.p
Common NamePHYPADRAFT_189058
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 700aa    MW: 78645.5 Da    PI: 8.0001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_1320V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-08485525340
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        +W+++E +ll +av+++++g   +W+ +a+++g++R+ +++
  Pp3c12_1320V3.3.p 485 PWSKQEVDLLRKAVQKFPKGtsqRWEVVANYIGTNRSVEEI 525
                        8***********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.6E-2093198IPR001623DnaJ domain
SuperFamilySSF465651.23E-1993175IPR001623DnaJ domain
SMARTSM002714.2E-1596171IPR001623DnaJ domain
CDDcd062572.84E-1197168IPR001623DnaJ domain
PROSITE profilePS5007617.78697179IPR001623DnaJ domain
PfamPF002261.8E-1697176IPR001623DnaJ domain
PRINTSPR006252.5E-6102120IPR001623DnaJ domain
PRINTSPR006252.5E-6120135IPR001623DnaJ domain
PRINTSPR006252.5E-6151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.028478521IPR017877Myb-like domain
SMARTSM007175.8E-6482535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-5484525IPR009057Homeodomain-like
SuperFamilySSF466891.79E-7484527IPR009057Homeodomain-like
CDDcd001679.89E-5485525No hitNo description
PfamPF002493.4E-7485525IPR001005SANT/Myb domain
SMARTSM007176.9E-7639691IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-9642689IPR009057Homeodomain-like
PROSITE profilePS500906.899643689IPR017877Myb-like domain
PfamPF002491.6E-5643686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-4643685IPR009057Homeodomain-like
CDDcd001672.73E-5643685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MPGTQDRLYI TYFADDIPEV LPEYVASNSK CYPRVGQEPA GICFHEAAKR ALGVDKESVG  60
AEEVVPEKKD KSGESPAVDS YQFKGKKKSK DGVESQDHYA LLGLSHLRFL ATEDQIRKSY  120
RESALKHHPD KQAALLLTEE TEEKKEIKKE EIDRHFKAIQ LAYEVLIDPV KRRAYDSIDE  180
FDDEIPSDCA PGDFFKVFGP VFARNGRWST IQPVPSLGDN ETDMVSVDSF YVFWWSFKSW  240
REFPHADEFD LEQAESREHK RWMERQNAKF REKAKKEENA RIRLMTENAY KKDPRIIRRK  300
EEEKAEKLRK KQAKFQARRD KEEEAARALE EERLRKEEED KRAAEEAFVQ KKLKEKEKKL  360
LRKEKARLRG VAAGVVAKDE SGVSDDDVEK LCTSLEISLL RGLCEKLEGI CEVEEQAEYL  420
RKVIRGAERI ISSDSAASGT PVRVDSSSSI SSLDATTSKT QDKCGVEVLG EKGKKTTTSV  480
TEERPWSKQE VDLLRKAVQK FPKGTSQRWE VVANYIGTNR SVEEILRGVK TVLLQKPDSS  540
KAFDSFLQKR KTRNVVIDSP LSTREDGVGN VNSGELHGTK VAGNGTVGGE KIHESNSKQT  600
TAAEQLAGGM KSENGAEPTK ASLQSVQSNG AAAHGAAAEV EGWSEAQEVA LVKAIKAFPK  660
DTVNRWDRIA TAVPGKSKAQ CFKKFAELRD SFRNTKKAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1819329620123Zuotin
5dje_B1e-1819329620123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.173420.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390803.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390804.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390805.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390807.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2K1JP220.0A0A2K1JP22_PHYPA; Uncharacterized protein
STRINGPP1S128_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.16e-92DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]