PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_10V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 799aa    MW: 87393.6 Da    PI: 5.7071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_10V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.91.2e-944427962373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      v+lLl++Aeav++gd+e+a+a+Larl+++ sp++ +++qR+a+yf eAL++r+++ +++ + +l + +  ++ ++ ++++a+  f evsP++kf
  Pp3c12_10V3.8.p 442 VNLLLRAAEAVDNGDAEMAKAILARLNQHISPSReQSIQRVAHYFREALETRIMG-WENFVVQLsQDRVLHPLEEFHKVNAYVRFCEVSPYHKF 534
                      799**************************9999879*******************.6666644436666666667888888888********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +h+taNqaIle +egee +HiiDf+++ G+QW+++lq +a  R+  +  p++R+T+vg      ++++++tg                   v++
  Pp3c12_10V3.8.p 535 AHFTANQAILETLEGEESIHIIDFQMGAGAQWASFLQDIAcLRAagKAVPTVRLTVVGT----GADQIHATGA------------------VVT 606
                      ****************************************7777766689*********....8888888885..................567 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr. 277
                      r e+le++++r++ +Ea+aVn++++lh+ll  ++++++   +vLk+v + +Pkvv+ veqea h+++sF +rf+eal+yy+ lfdsl + l + 
  Pp3c12_10V3.8.p 607 RPECLEVSMFRLRDHEAVAVNFIFSLHELL--DGDTSNGLATVLKAVLEARPKVVTTVEQEAYHSGPSFQQRFSEALQYYMFLFDSLTNPLEAg 698
                      88****************************..66666677***********************************************7776541 PP

             GRAS 278 .eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                       +s+ + ++E  ll++ei+n+vac g +r++rhe+le+Wr+r+ +a F++ plse    q + l+ + +   g++v +++gsl+l W++rpL++
  Pp3c12_10V3.8.p 699 vDSSVNLSIESYLLAPEIMNIVACDGVARVKRHERLEHWRKRMLAARFHSRPLSEVSLLQSEILVTQLSsRSGFQVICDQGSLLLSWRGRPLLA 792
                      167999***************************************************************999********************** PP

             GRAS 370 vSaW 373
                      +S+W
  Pp3c12_10V3.8.p 793 ASSW 796
                      **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.817415776IPR005202Transcription factor GRAS
PfamPF035144.1E-92442796IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MVITAGSSGG AGSGSESTRI NQMRAAEEQW WVDVLAPVSV IGSSAVSQQE SVAPNANVEF  60
GVPRLYVEEP DNMLFAQPAD PIVMKLLMGD GQFCGQGDIQ SVQRSRDIDT VMFEQDSWSS  120
NQHQMCHHLG DKPPSRLTLP DHFTGGTFSS FLNSSVSLAP SIPNSDSHAS FTSLPRALSL  180
PSQLHDIPHN YPKGTGVSVL STTTTPVASM SRPIGHPYLA SSSFLDAMSV PPNASARGDC  240
VAQSPLLGNS IYEDQLSQRN ALTVDQTSLV MEERSVSMQG SLLSSPSSLY AVHLNFPSTT  300
PAYHHQEPEE GFEHRGILQR SFSSLPSTAS QNQRIKAPAM MSGDYLHQLS WNAGRMSPQW  360
QKLAPLNRSL RATGERKRET INDRTLGALS PLSTVPGFCL GRPQDPGDSC EQVGVELKQE  420
DVNLDTESID GGVIPEGGLA IVNLLLRAAE AVDNGDAEMA KAILARLNQH ISPSREQSIQ  480
RVAHYFREAL ETRIMGWENF VVQLSQDRVL HPLEEFHKVN AYVRFCEVSP YHKFAHFTAN  540
QAILETLEGE ESIHIIDFQM GAGAQWASFL QDIACLRAAG KAVPTVRLTV VGTGADQIHA  600
TGAVVTRPEC LEVSMFRLRD HEAVAVNFIF SLHELLDGDT SNGLATVLKA VLEARPKVVT  660
TVEQEAYHSG PSFQQRFSEA LQYYMFLFDS LTNPLEAGVD SSVNLSIESY LLAPEIMNIV  720
ACDGVARVKR HERLEHWRKR MLAARFHSRP LSEVSLLQSE ILVTQLSSRS GFQVICDQGS  780
LLLSWRGRPL LAASSWIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4344779624377Protein SCARECROW
5b3h_D2e-4344779624377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9TCP40.0A9TCP4_PHYPA; Predicted protein
STRINGPP1S205_1V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-64GRAS family protein