PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_10790V3.1.p
Common NamePHYPADRAFT_173369
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 403aa    MW: 44586.1 Da    PI: 6.419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_10790V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.8e-1189141153
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                         s+y GVr ++  g++vAe+r+   + + + k+++lg++  +e+Aa+a + ark l
  Pp3c12_10790V3.1.p  89 SKYYGVRLKRGLGKYVAELRVsE-W-KvVDKKIWLGTYEKEEGAARAVDLARKLL 141
                         7999*****************53.2.3444**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-689139IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-889141IPR016177DNA-binding domain
SMARTSM003804.8E-590158IPR001471AP2/ERF domain
PROSITE profilePS5103214.19790152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1190146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPDNSIYPPE SRCSALEDFT ALGQIPCPFH GEYKHAILAS PRTHDRASIN PISHAHGGRT  60
TTRGRSGAKR KSKDLSDEPR SKAKRKCSSK YYGVRLKRGL GKYVAELRVS EWKVVDKKIW  120
LGTYEKEEGA ARAVDLARKL LKCKKIRPFN LPCDELDNRA MSFQMPPNLI LSDVNNQTMY  180
VKVKDLLKSE CRNYAASFES SELNPSHSTA SAAEAQYCPV GLFSHEEVDM YSDSELSTLH  240
TVSDSIVTSD QLYRTQLHSS KGRFQASGSN LEFSVDDCIG SFTPECTLYD QSLYDYPSSL  300
AFTNTPQYNS GLQQEQQKQT LLGIDSNGVI TPPALMTIPT LMTCAGVEES QEPDNTAILE  360
LIQQSNSPGP FTPPISDSFL CFIPPPDAGD ARRCFSFDPF SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391400.10.0uncharacterized protein LOC112289911
RefseqXP_024391401.10.0uncharacterized protein LOC112289911
RefseqXP_024391402.10.0uncharacterized protein LOC112289911
RefseqXP_024391403.10.0uncharacterized protein LOC112289911
RefseqXP_024391405.10.0uncharacterized protein LOC112289911
RefseqXP_024391406.10.0uncharacterized protein LOC112289911
RefseqXP_024391407.10.0uncharacterized protein LOC112289911
TrEMBLA9U2W60.0A9U2W6_PHYPA; Predicted protein
STRINGPP1S450_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-09ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]