PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_3780V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 433aa    MW: 47658.7 Da    PI: 6.7739
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_3780V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.7e-13170263186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        +W++  + +L++a  e+ ++l rg+   + W+++++++            g+ ++++qC+ k +nl+kryk ++e ++  +  ++s++ ++d
  Pp3c11_3780V3.3.p 170 EWSETATTVLLQAFGEKYRALDRGNFTSKIWADIAARVnsrgsltgnLVDGIPKTQEQCRIKVDNLKKRYKVEREKKRV-SGSVTSKWIFYD 260
                        5********************************************9999**********************99999987.578888****** PP

           trihelix  84 qle 86 
                         ++
  Pp3c11_3780V3.3.p 261 MMD 263
                        998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.8E-19170265No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMLHHEQHQQ QQHPGDGEGA GGMDAMACED HHVVVGRMDL APQVQGLRML SEQQEHEQQR  60
ILYGEKGLGV HDHDAMGKVQ HPGHVVVFGD RGHENGHEHA HAYGVELGNG KHGVVEDMDA  120
KLGGLGAAML RVDAKMEGRE RQMSEGDAGT ANSPQVGKLR GRSSRDPVIE WSETATTVLL  180
QAFGEKYRAL DRGNFTSKIW ADIAARVNSR GSLTGNLVDG IPKTQEQCRI KVDNLKKRYK  240
VEREKKRVSG SVTSKWIFYD MMDELIGANP RHVRSGGGLG GADSPLGLEN GGTPLGIRTP  300
GEDGDRMYYL ESAGGEGDQT SETIPKISPV QGRRKRKRAL EDLERDHVNA PALMALFEGY  360
NVPPSIIDAM LQEDMDEYTL INSRDITVLL DQLRSKHRLH IKLGPAERIK QAIEAAKEKK  420
NSLALVIQQQ QQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389101.10.0uncharacterized protein LOC112288783
TrEMBLA0A2K1JTD10.0A0A2K1JTD1_PHYPA; Uncharacterized protein
STRINGPP1S39_431V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-15sequence-specific DNA binding transcription factors