PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23930V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 654aa    MW: 72848.4 Da    PI: 5.7347
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23930V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.11.1e-1052886522374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                         v+lLl+cAea+s+++   a  +L rl+ +     ++mqRl ++++ AL ar+++   s+ yk l+   +      + l+++++ ++ +P++
  Pp3c11_23930V3.2.p 288 VQLLLSCAEAISNQQIDVAYVFLRRLNGMLGHCTTTMQRLGTVLVDALYARITNsIDSGRYKGLEKDGD--VAILDMLHSFSVIYDYTPFI 376
                         89****************************************************444556666655444..3699**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         kf +lt Nq Il+aveg+++vH+iD++ +  G+QWpa +q+La Rp+gpp+lRiT +g+      + le+ +e+L++fA++l+vpfef +l
  Pp3c11_23930V3.2.p 377 KFPNLTLNQIILDAVEGAQHVHVIDLNTGwRGMQWPAVIQSLALRPGGPPHLRITSIGK-----LDDLEQSREKLQDFARNLQVPFEFCPL 462
                         ***************************9857****************************.....89************************6 PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          + ++++++++ L+++  E+l +n++ q h+ll   +  +++ +++L  ++sl+P+vv ++e++adhns++Fl+rf+e+l+yysa++d+l+
  Pp3c11_23930V3.2.p 463 -VVDMKSFDVRLLDLRDWEVLCINSANQFHQLL---TWGDERFHRFLCDLRSLNPRVVAFSENDADHNSPKFLNRFFECLRYYSAVYDALD 549
                         .778*****************************...33333478*********************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                         a lp+ s + + vE+ + g++i+n+vaceg++r+ rhe +++W++r+e aGF+p+pls++a +qa++ll+ +    gy++  e+g lvlgW
  Pp3c11_23930V3.2.p 550 AALPSGSPALQQVEHLFTGQKIRNIVACEGEDRITRHEPMKNWSRRMELAGFRPMPLSTRAISQARALLEIYFsLSGYNLRTENGILVLGW 640
                         **********************************************************************99989**************** PP

                GRAS 363 kdrpLvsvSaWr 374
                          + pLv vSaWr
  Pp3c11_23930V3.2.p 641 DNTPLVGVSAWR 652
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.824261631IPR005202Transcription factor GRAS
PfamPF035143.9E-103288652IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MADGDLTSIF SQRTQPISDP WGVAVPQQQL LHYRQFPQLL QDLDNARRDY SSCQPPQSPC  60
DIQEQNSNLS NRMLQAKVGS YNPGFSSLRP SALPSQNHLN FPAVSPQIVQ YSLPQALVGT  120
KGDYQGSDFH LQGSQPTIAA GSNAFTEVIS RISPVGRDTL AGADQQHQAL FVESGKNIEH  180
PQLSTWPSIT TLYKVDERAT ELQTDTLGEL RSGPEYVADL YTGGLLLCGQ VYNEGRCMEV  240
QSNSLSSGAE SMPILQQNFL GDGGIIKVLD TASNRQSQPT SATGLQIVQL LLSCAEAISN  300
QQIDVAYVFL RRLNGMLGHC TTTMQRLGTV LVDALYARIT NSIDSGRYKG LEKDGDVAIL  360
DMLHSFSVIY DYTPFIKFPN LTLNQIILDA VEGAQHVHVI DLNTGWRGMQ WPAVIQSLAL  420
RPGGPPHLRI TSIGKLDDLE QSREKLQDFA RNLQVPFEFC PLVVDMKSFD VRLLDLRDWE  480
VLCINSANQF HQLLTWGDER FHRFLCDLRS LNPRVVAFSE NDADHNSPKF LNRFFECLRY  540
YSAVYDALDA ALPSGSPALQ QVEHLFTGQK IRNIVACEGE DRITRHEPMK NWSRRMELAG  600
FRPMPLSTRA ISQARALLEI YFSLSGYNLR TENGILVLGW DNTPLVGVSA WRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5829465126378Protein SCARECROW
5b3h_A2e-5829465125377Protein SCARECROW
5b3h_D2e-5829465125377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.125630.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388062.10.0DELLA protein RGL1-like
RefseqXP_024388063.10.0DELLA protein RGL1-like
RefseqXP_024388065.10.0DELLA protein RGL1-like
RefseqXP_024388066.10.0DELLA protein RGL1-like
RefseqXP_024388067.10.0DELLA protein RGL1-like
TrEMBLA0A2K1JW180.0A0A2K1JW18_PHYPA; Uncharacterized protein
STRINGPP1S31_35V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-75RGA-like 2