PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23910V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 642aa    MW: 71090.9 Da    PI: 5.0031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.42.4e-1132766391373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+lLl+cAea++++++++a+ +L +l   ++ +g pmqR+a yf +AL+++la+          +s+t++++ s++ +a+++f+++ P+ 
  Pp3c11_23910V3.2.p 276 LVHLLLACAEAIDKSHFHKANPILDQLGRFSNAYGGPMQRIALYFGNALSNHLAG---------VVSPTDPHSPSDSKFAYQAFYKILPFA 357
                         68*****************************************************.........444444556789999************ PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kfsh+taNq+I+eav +++ vH++D+di+qGlQWp+++q+La Rp+g+p+lRi +vg     + e+l++t++ L++fAe l+vpfef++ v
  Pp3c11_23910V3.2.p 358 KFSHVTANQTIYEAVLRSQNVHVVDLDIQQGLQWPCFIQSLAMRPGGAPHLRISAVGM----NMESLQTTKRWLTEFAEDLKVPFEFTP-V 443
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          ++le+l++ +L+++ +E la+n++  lh+l  +++ le+    +L ++++l+P+vv++ e ea++n++sF +rf+eal+yy alfdsle 
  Pp3c11_23910V3.2.p 444 LSTLENLTPAMLNIRADEDLAINCSQVLHTLSGDEAVLEK----LLCMFRNLRPNVVTLLEAEANYNAASFITRFIEALHYYCALFDSLEG 530
                         9*******************************99999999....*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.........yrveees 355
                          l+r+s +r  +E   ++ ei +++a + ++rr rh + e+Wr+ +++aGF+++++s++++ qa++ll+   s+          y++ ees
  Pp3c11_23910V3.2.p 531 ALGRDSADRFHIESTAFAAEINDILASKDSSRRVRHVRSETWRALFKKAGFRSMAFSSYTVRQAQMLLEILTSKHlmqanspipYKLSEES 621
                         ********************************************************************98775443555667778888*** PP

                GRAS 356 gslvlgWkdrpLvsvSaW 373
                          sl+lgW++ p++ vSaW
  Pp3c11_23910V3.2.p 622 TSLILGWQETPVIGVSAW 639
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.316250611IPR005202Transcription factor GRAS
PfamPF035148.3E-111276639IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MTATHVASNK RSSTSFPEFV TAPCKRWKSE AAWHHVEEIV PEPPPAQDFD LKVKTCYSNM  60
VHPEPTSVLD LQTSPGRSCS STSLSSGTDS PHSVSTDSSN FSTTLQQVEQ DDIANWVDCM  120
GLPEFEECGR PLEEVLKSDI DFNTTDIDFG FEMTSLEHCS AVAEHDFSVS LLSDFLGEPD  180
ENLLLPESFH YAKRLQELDD SLSSMLNEVR SSGSDSESSI PTTAELVRLV EAQSCEDLGR  240
QRACGARNHH HSRAGSLGST SEPQTLQQPE NSGLQLVHLL LACAEAIDKS HFHKANPILD  300
QLGRFSNAYG GPMQRIALYF GNALSNHLAG VVSPTDPHSP SDSKFAYQAF YKILPFAKFS  360
HVTANQTIYE AVLRSQNVHV VDLDIQQGLQ WPCFIQSLAM RPGGAPHLRI SAVGMNMESL  420
QTTKRWLTEF AEDLKVPFEF TPVLSTLENL TPAMLNIRAD EDLAINCSQV LHTLSGDEAV  480
LEKLLCMFRN LRPNVVTLLE AEANYNAASF ITRFIEALHY YCALFDSLEG ALGRDSADRF  540
HIESTAFAAE INDILASKDS SRRVRHVRSE TWRALFKKAG FRSMAFSSYT VRQAQMLLEI  600
LTSKHLMQAN SPIPYKLSEE STSLILGWQE TPVIGVSAWS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-752586401379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.134260.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388068.10.0DELLA protein RGL2-like
TrEMBLA0A2K1JW220.0A0A2K1JW22_PHYPA; Uncharacterized protein
STRINGPP1S31_40V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-77RGA-like 2