PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_23000V3.1.p

Common Name

PHYPADRAFT_71136

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 515aa MW: 55028.4 Da PI: 6.7794

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_23000V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	2.9e-08	110	159	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL v+ +++L Pp3c11_23000V3.1.p 110 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVNEL 159 5677889*****************9997....79******9999988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.004	109	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-10	110	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-6	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.14E-7	110	164	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-9	110	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-5	115	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PRINTS	PR01217	7.9E-10	227	239	No hit	No description
PRINTS	PR01217	7.9E-10	244	260	No hit	No description
PRINTS	PR01217	7.9E-10	319	340	No hit	No description
PRINTS	PR01217	7.9E-10	345	361	No hit	No description
PRINTS	PR01217	7.9E-10	367	384	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MAASSNSWLH QNLLPQHNAQ QQGSPHPLYH HSELPHVGSS QSGPLQHMNL AHVGHGMDSH 60 PPLHHGMHSA LHMPREMQQQ QDPHIPVHVG TGTSGRAVGP SENGDAASVR KVHKADREKL 120 RRDRLNEQFG ELAGVLDPDR PKNDKATILG DSVQVVNELR SEVKRLKCEQ TALLDESRDL 180 QQEKSELREE KAALKSETEN LQNQLQQRLR GMLPWISMDP TAALMGAPPY PYPHPMPVPQ 240 PPPSPPPSST PPASESASGL TTSQPSVVGP SPFLSLAPPG VYMHPYAMYG ARSPDGGHPY 300 MPYPPYPGSV GNHSQVERPY AQYPSPIPTM PGYLVQMQPP PPQGPANASA VPMYRPPPPP 360 YAVSGISLVP PGHQPRVPPH STNPPINGPQ AASPEPHGVE TSLQLQTPGG SSRSPSTSEL 420 PPSQRSGEPS KTHERADLEL TPPGTKEASD LAGSKPDDIN GGDSISTLTL VSKSLQSRAD 480 ATPSPSGGSN SEEGHLRGST LEPSLRSAEQ LPKL*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MAASSNSWLH QNLLPQHNAQ QQGSPHPLYH HSELPHVGSS QSGPLQHMNL AHVGHGMDSH  60
PPLHHGMHSA LHMPREMQQQ QDPHIPVHVG TGTSGRAVGP SENGDAASVR KVHKADREKL  120
RRDRLNEQFG ELAGVLDPDR PKNDKATILG DSVQVVNELR SEVKRLKCEQ TALLDESRDL  180
QQEKSELREE KAALKSETEN LQNQLQQRLR GMLPWISMDP TAALMGAPPY PYPHPMPVPQ  240
PPPSPPPSST PPASESASGL TTSQPSVVGP SPFLSLAPPG VYMHPYAMYG ARSPDGGHPY  300
MPYPPYPGSV GNHSQVERPY AQYPSPIPTM PGYLVQMQPP PPQGPANASA VPMYRPPPPP  360
YAVSGISLVP PGHQPRVPPH STNPPINGPQ AASPEPHGVE TSLQLQTPGG SSRSPSTSEL  420
PPSQRSGEPS KTHERADLEL TPPGTKEASD LAGSKPDDIN GGDSISTLTL VSKSLQSRAD  480
ATPSPSGGSN SEEGHLRGST LEPSLRSAEQ LPKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.5344	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388553.1	0.0	SH3 domain-containing protein C23A1.17-like isoform X1
Refseq	XP_024388554.1	0.0	SH3 domain-containing protein C23A1.17-like isoform X1
Refseq	XP_024388555.1	0.0	SH3 domain-containing protein C23A1.17-like isoform X1
Refseq	XP_024388557.1	0.0	SH3 domain-containing protein C23A1.17-like isoform X1
TrEMBL	A9RVD9	0.0	A9RVD9_PHYPA; Predicted protein
STRING	PP1S31_147V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3401	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_23000V3.1.p
Entrez Gene	5921432

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]