PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_22370V3.1.p
Common NamePHYPADRAFT_71169
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 583aa    MW: 64231.9 Da    PI: 6.4262
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_22370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer409.3e-13266316658
         ZF-HD_dimer   6 YkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                         Y +C+kN  ++ G  +vD    f++s g++ ++ al+C  CgCHRnFH r v+
  Pp3c11_22370V3.1.p 266 YAQCQKNTCVARGPSSVDRFTKFLSS-GKD-EKLALTCPPCGCHRNFHQRVVD 316
                         99***********************9.554.699***************9875 PP
2Homeobox18.43.7e-06512572157
                         TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 
                         +r+Rt+++ eq e L+++ ek   ++  +++e + + +   g++ +  k+W +N ++k+k+
  Pp3c11_22370V3.1.p 512 KRTRTRISLEQREKLNAFAEKaGWTVVGQRKETIDATCqyiGIEPKTLKYWIHNSKQKWKR 572
                         79*************9988878899999******9999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152317.103266314IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.7E-13266315IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-5266316IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.1E-18506573IPR009057Homeodomain-like
SuperFamilySSF466899.97E-12508572IPR009057Homeodomain-like
PROSITE profilePS500719.458509573IPR001356Homeobox domain
CDDcd000860.00462512573No hitNo description
TIGRFAMsTIGR015659.9E-17512568IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGMDISRYNH CEVHTNEVKA YKVQDGMLPT VSSDSGADQQ GGDVAGRMEF WPPGVGVADH  60
ANKHCVEGGI DLCGSVIHGN DALDQMLQFP KAGDVRSWRD LTGASRTNSE SKAFRRGVIG  120
GRLGHHMSCP CDSAMMNDFK GSSYLLGKSF RIGVGESEDV DGSVEGRQGE AGLGRWEEAA  180
TSQNEGDPHA QFNVVQEEEL SNRVNDLCSQ GDRSNEHRLQ EFSRDMIDEC NMVGIDLRRR  240
NHPEDLDGLD LREAGLKGVS RDCDPYAQCQ KNTCVARGPS SVDRFTKFLS SGKDEKLALT  300
CPPCGCHRNF HQRVVDACEE GEEEELTVKA KREKLNSGNY FSSFVDHCNI DRVAHELMAV  360
ANEALALAQD SICHGEGRGL PENGVYSVEE HTIIAKISLE NLDHITKVIS STTECLTLLR  420
KRKSVNPRDK DVNKSKSCPH EGGPFSTDAS PVITVENGAI SLLVPPSPGR QFREDAIGGS  480
PTLIISESCG IRNCNLGMPR KLPLERVSHK LKRTRTRISL EQREKLNAFA EKAGWTVVGQ  540
RKETIDATCQ YIGIEPKTLK YWIHNSKQKW KRQPSLSEDP SK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388356.10.0uncharacterized protein LOC112288433
TrEMBLA0A2K1JVR20.0A0A2K1JVR2_PHYPA; Uncharacterized protein
STRINGPP1S31_206V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.11e-12homeobox protein 26
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]