PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20430V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 477aa    MW: 53302.8 Da    PI: 5.1034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20430V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.8e-35451372103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++e+++d++++ ++swse g+sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Pp3c11_20430V3.1.p  45 FLTKTFEMVDDPATDAIVSWSEVGSSFVVWNTPEFAQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRRD 126
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k +
  Pp3c11_20430V3.1.p 127 LLRSIHRRKPS 137
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-3937128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3540134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6241134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGGETQWPSA EAKEKNGIPP PAGGTASGNP TSQMDAPQSS GPPPFLTKTF EMVDDPATDA  60
IVSWSEVGSS FVVWNTPEFA QELLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGRRDLLRS IHRRKPSSHA QQQQGAYVEG GKSGLEAEIE RLKTDKNVLM LELARVRQQQ  180
QSTFRDLQLM AQRLHVSESR QQRMITFLAK AMANPSLFAQ FVSQQNESNH LVRKKRRLPI  240
QEDGDMDESM SPESSIENQI VTYQPSELGE ARARARVIEI FCSSDSHSAM DSRHFEALMR  300
EPDTSPNSGD SNILNRQSRV TVEEINTKLP DIFSSAPVVI DVSVNEAQEA TSISPLNFDI  360
MRASSGDKSA ERSRHPHSEY RDSNDLHEPD CNRGTASHEA EVQSARTDSA AHNSGFWEQF  420
LTEDPQPVTR AEIDLEREPE SETEDVSQGG KNAQQSSFGR PRVEFLSHQL GQLAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-28231341129Heat shock factor protein 1
5d5v_B4e-28231341129Heat shock factor protein 1
5d5v_D4e-28231341129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28020.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389317.10.0heat stress transcription factor A-2e-like
TrEMBLA0A2K1JVG90.0A0A2K1JVG9_PHYPA; Uncharacterized protein
STRINGPP1S31_388V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.15e-90heat shock transcription factor A1E