PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_13030V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 25464.3 Da PI: 6.6447 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Pp3c11_13030V3.1.p 86 YSCSFCHREFRTAQALGGHMNVH 108 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.32E-7 | 83 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 84 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-6 | 86 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0065 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGTRTLLLSD QEYLRGGSSW GAMHDPDVHE SWTMPSNSSQ YAQVGGGGGN TWSRRNAANN 60 YESDSWEVRA FAEDASTSGQ WPPRSYSCSF CHREFRTAQA LGGHMNVHRR ERAQANQPLQ 120 LRSGTSMDTE PPNSTSHCAS NDWPTRSESH DVQYASQYRR HPFDYQSYDY RHAHSDSPQC 180 YGETSSSYRS AYSLRSQAEA SLRNPYHLPF ESVDLELRLG QRHD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-12 | 81 | 108 | 2 | 29 | superman protein |
2l1o_A | 4e-12 | 81 | 108 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12852 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388201.1 | 1e-166 | zinc finger protein 10-like | ||||
TrEMBL | A0A2K1JUJ4 | 1e-165 | A0A2K1JUJ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S11_120V6.1 | 1e-165 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 6e-22 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_13030V3.1.p |