PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c10_10240V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1079aa MW: 116025 Da PI: 7.256 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 54 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l Pp3c10_10240V3.4.p 54 KGGWTPEEDETLRRAVQCFNGKNWKKIAEFFT-DRTDVQCLHRWQKVL 100 688****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ ++v+++G + W+ Ia+ ++ gR +kqc++rw+++l Pp3c10_10240V3.4.p 106 KGAWTKEEDDRIMELVNKYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 59.4 | 7.9e-19 | 158 | 202 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++Ed+ l++a++++G++ W+ Ia++++ gRt++++k++w++ Pp3c10_10240V3.4.p 158 REAWTQQEDLALIRAHQLYGNK-WAEIAKYLP-GRTDNSIKNHWNST 202 789*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.428 | 49 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 54 | 100 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-15 | 55 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-22 | 56 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.91E-12 | 57 | 100 | No hit | No description |
PROSITE profile | PS51294 | 32.127 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-32 | 103 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-17 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-15 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 113 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.493 | 157 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-18 | 157 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-17 | 158 | 201 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 160 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-14 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1079 aa Download sequence Send to blast |
MASLTVKGKS SSSNENMQQR SSACTSAPES DEDTSHHLPP VHGRTGGPTR RSSKGGWTPE 60 EDETLRRAVQ CFNGKNWKKI AEFFTDRTDV QCLHRWQKVL NPDLVKGAWT KEEDDRIMEL 120 VNKYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPSIKREA WTQQEDLALI RAHQLYGNKW 180 AEIAKYLPGR TDNSIKNHWN STMKKKVDPL TANDPISKAL AVYQAQQEQS MNSGAGAGQA 240 DSGSIGGRPG PPMSEATTSS GPSRHNSNAH AVGRTSHYGE QDTKSTGSAP PPPPHFDMYS 300 NRGKDQQRNA SHLQPKKEES QNDPNGQTQG FSGWSSGQAP MYSGGFSRVP PVGSSSQSNS 360 ITNQLVTSMQ NKRSLSNAEL TRIPSFSNSF SLNPAPESGS HSYMSSAMPV PLPNLGSFFA 420 SSHMSMEPLS NMQPMTSFSG RMVSSGGETL AMTGSMPSYE QLSRCNLPLS QATEADTAVE 480 DSGASVPCES QHEEPMGQAL EQAMDQELSE FSSDDLLRAA SEAVDEFQLQ SPMVTEEDLE 540 DKSKVLERSD GLFYEPPRIA DSPFMSYDLV SSLQAYSPLG VRHMIMPAGN CITPPNYLQS 600 PFQGKSPQSK LRSAARSFSG SPSILRKRPR QILIPLKTGT SGEKLDAKFK EAQTTADNVD 660 AAGACGNNLK TAEASQGTLV GKSSKPAGLH QTCLARTALF VSPASKLSNR VDSEVTRNTG 720 NQSQDCTTGS NGGGEGCGAT FSARVSREGS VSGNALRENA GGKFNKRGRS HGSNLEYSTG 780 SRWENGAQTS KQEGSVLTEQ QQNGQNGQGH PNSSENHGGA MVLGKHGRGE LRQSCDTSAV 840 GSGDSVGGSI SVKVSNKWEL MSPGNAATLS SWGSVTCAMA ACFSPGVTIL QHTPGKDWLQ 900 DFDTTNIFAS PRFPSPRFAS PLWRSPWRLD PLPSAQKEGA LAFMDGLEVP PEDGVDDALG 960 LMRQSNEHNT PAYSEAEEVL AKQPPVQPMP SPLYRLRTSS SRKGHSMKEN RRSLVESDGT 1020 ASALVSWLLP SPEHGITGTP VRGASALGLN VGGEDTLMVG GGGCEQFSPS MYLLKECR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-69 | 54 | 207 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-69 | 54 | 207 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 624 | 630 | LRKRPRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386534.1 | 0.0 | transcription factor MYB3R-1-like isoform X1 | ||||
TrEMBL | A0A2K1JYH5 | 0.0 | A0A2K1JYH5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S120_159V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-88 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c10_10240V3.4.p |