PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 317aa MW: 35806.8 Da PI: 6.5093 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.3e-12 | 181 | 206 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_016652843.1 181 YQPDICKDYKETGYCGYGDSCKFMHD 206 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.44E-9 | 177 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 180 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 180 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-12 | 181 | 211 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-10 | 181 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 4.4E-13 | 243 | 304 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 3.4E-8 | 256 | 297 | No hit | No description |
SuperFamily | SSF57850 | 1.06E-12 | 256 | 299 | No hit | No description |
PROSITE profile | PS50089 | 10.616 | 257 | 295 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 3.76E-7 | 257 | 294 | No hit | No description |
SMART | SM00184 | 8.5E-5 | 257 | 294 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 272 | 281 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MADSGGNAEP GEVCNFFRKP LKKQNIRKRR VDEDEEDDDS KSGGTSLPSQ RKASKLDGKL 60 YFSSEPAKCS TLDSSAIFEF KSSKEIQVEH DSGATATLET ETDFSRDARA VRERVLKQAE 120 EALKGKSKVT GNDKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD 180 YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKIRKRN LALGEDDVDQ 240 TDEDDEDDED GSLPFACFIC RQPFVDPVVT KCNHYFCEHC ALKHHSKNKK CFVCEKPTLG 300 IFNTAHEIRK RMAAEGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 1e-67 | 81 | 312 | 104 | 317 | RING finger protein 113A |
5z58_M | 1e-67 | 81 | 312 | 104 | 317 | RING finger protein 113A |
6ff4_t | 1e-67 | 81 | 312 | 104 | 317 | RING finger protein 113A |
6ff7_t | 1e-67 | 81 | 312 | 104 | 317 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245216.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_016652842.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_016652843.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-164 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A251NX62 | 0.0 | A0A251NX62_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245216.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-160 | C3H family protein |